View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19236_high_21 (Length: 335)
Name: NF19236_high_21
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_high_21 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 33682926 - 33683243
Alignment:
| Q |
18 |
gtaatcaaccaacattttaacaaattattttcttctctctaaaactcttaccctctaatattaatcccataatttctcctttatattatgctctattcta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33682926 |
gtaatcaaccaacattttaacaaattattttcttctctctaaaactcttaccctataatattaatcccataatttctcctttatattatgctctattcta |
33683025 |
T |
|
| Q |
118 |
aatcattagaatactagtgaaaacttgaactttatcggttcatcactagaatccatttttcttttgtcaaagtataataagtgtactaattttgaactca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33683026 |
aatcattagaatactagtgaaaacttgaactttatcggttcatcactagaatccatttttcttttgtcaaagtataataagtgtactaattttgaactca |
33683125 |
T |
|
| Q |
218 |
tttaaaaaacactaattttatccaaagtcgatattttcaaaaggaatacaaataaaataaatttaatttccttccatctagagttcnnnnnnnnaaagga |
317 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33683126 |
tttaaaaaacactaattttatccagagtcggtattttcaaaaggaatacaaataaaataaatttaatttccttccatctagagttcttttttttaaagga |
33683225 |
T |
|
| Q |
318 |
cctttaacctggagttat |
335 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33683226 |
cctttaacctggagttat |
33683243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 6646724 - 6646643
Alignment:
| Q |
48 |
tcttctctctaaaactcttaccctctaatattaatcccataatttctcctttatattatgctctattctaaatcattagaat |
129 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||| |||||||| ||| ||| |||||||||| |||||||||| |
|
|
| T |
6646724 |
tcttctctctaaaactcttactctctaatatgcatcccacaatttctcttttgtatcggattctattctaattcattagaat |
6646643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University