View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_high_23 (Length: 332)
Name: NF19236_high_23
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_high_23 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 7801926 - 7802257
Alignment:
| Q |
1 |
tttgtgctggtgttcatctcacttctttgaaatttagaaaaaagggaaggaatttaaaatgttttggcttcactgtgctgtttggttgtagatcaaaggt |
100 |
Q |
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| T |
7801926 |
tttgtgctggtgttcatctcacttctttgaaatttagaaaaaagggaaggaatttaaaatgttttggcttcactgtgctgtttggttgtagatcaaaggt |
7802025 |
T |
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| Q |
101 |
gtaagtatagttggtccttccctggaattgttttgagtgttggagttataagtgctgctaaagttgaccctgttgttgctttggttaaagatatcatcaa |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7802026 |
gtaagtgtagttggtccttccctggaattgttttgagtgttggagttataagtgctgctaaagttgaccctgttgttgctttggttaaagatatcattaa |
7802125 |
T |
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| Q |
201 |
gggtactgaatatattatnnnnnnntaaaataaattagaatctatgaatgtctaagtgggattttatgcaaattttatggctagtgttgtggactattta |
300 |
Q |
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| T |
7802126 |
gggtactgaatatattataaaaaaataaaataaattagaatctatgaatgtctaagtgggattttatgcaaattttatggctagtgttgtggactattta |
7802225 |
T |
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| Q |
301 |
tgtctaagtgggatatcatcaatgtttgtttt |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7802226 |
tgtctaagtgggatatcatcaatgtttgtttt |
7802257 |
T |
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