View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_high_24 (Length: 322)
Name: NF19236_high_24
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 49432574 - 49432459
Alignment:
| Q |
12 |
caaagggaaggtactctatgaaataataccattttttggtagttttgtaacgacgctcgttccatactctgcaaagttagcaatttctgattgtgcttgt |
111 |
Q |
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| T |
49432574 |
caaagggaaggtactctatgaaataataccattttttggtagttttgtaacgacgctcgttccatactctgcaaagttagcaatttctgattgtgcttgt |
49432475 |
T |
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| Q |
112 |
aatatgatatttctag |
127 |
Q |
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|||||||||||||||| |
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| T |
49432474 |
aatatgatatttctag |
49432459 |
T |
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Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 49432366 - 49432282
Alignment:
| Q |
220 |
ggcaagagttaagtaaataacaatgttcaaaatgtgtactcgtccataatagtatttttagtattttaatacttttacttgcatt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49432366 |
ggcaagagttaagtaaataacaatgttcaaaatgtgtactcgtccataatagtatttttagtattttaatacttttacttgcatt |
49432282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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