View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19236_high_25 (Length: 310)

Name: NF19236_high_25
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19236_high_25
NF19236_high_25
[»] chr4 (15 HSPs)
chr4 (13-310)||(24627335-24627639)
chr4 (32-135)||(1505334-1505437)
chr4 (32-135)||(13701952-13702055)
chr4 (32-135)||(13712445-13712548)
chr4 (32-111)||(5599246-5599325)
chr4 (32-135)||(6735729-6735832)
chr4 (32-126)||(2895140-2895234)
chr4 (32-126)||(5908492-5908586)
chr4 (41-121)||(1604700-1604780)
chr4 (32-120)||(5579109-5579196)
chr4 (37-87)||(3329498-3329548)
chr4 (32-126)||(4852035-4852129)
chr4 (32-90)||(7451206-7451264)
chr4 (62-130)||(31663869-31663937)
chr4 (23-100)||(20349574-20349650)
[»] chr3 (11 HSPs)
chr3 (32-135)||(2747061-2747164)
chr3 (32-135)||(18111086-18111189)
chr3 (32-135)||(5835271-5835374)
chr3 (32-135)||(28034333-28034436)
chr3 (32-121)||(19440710-19440799)
chr3 (32-130)||(37489369-37489467)
chr3 (32-121)||(19359870-19359959)
chr3 (32-135)||(5938380-5938483)
chr3 (32-126)||(14521644-14521738)
chr3 (37-121)||(27170125-27170209)
chr3 (41-126)||(7782837-7782922)
[»] chr2 (9 HSPs)
chr2 (35-130)||(31347376-31347471)
chr2 (32-135)||(31314640-31314743)
chr2 (37-125)||(38211348-38211436)
chr2 (45-117)||(17863237-17863309)
chr2 (62-126)||(29742307-29742371)
chr2 (41-119)||(18010915-18010992)
chr2 (41-121)||(29747149-29747229)
chr2 (37-87)||(27085368-27085418)
chr2 (41-82)||(33125425-33125466)
[»] scaffold0046 (1 HSPs)
scaffold0046 (32-135)||(89835-89938)
[»] chr6 (7 HSPs)
chr6 (32-135)||(5131326-5131429)
chr6 (32-135)||(31113617-31113720)
chr6 (16-130)||(6406186-6406292)
chr6 (32-111)||(33301138-33301217)
chr6 (32-126)||(28144384-28144478)
chr6 (32-126)||(34256188-34256282)
chr6 (32-111)||(8519272-8519351)
[»] chr1 (11 HSPs)
chr1 (32-135)||(51843938-51844041)
chr1 (32-130)||(15088256-15088354)
chr1 (32-130)||(22210864-22210962)
chr1 (30-117)||(1991595-1991682)
chr1 (32-130)||(22219614-22219712)
chr1 (37-121)||(14150123-14150207)
chr1 (32-135)||(7898985-7899088)
chr1 (32-126)||(14115539-14115633)
chr1 (32-130)||(22207301-22207399)
chr1 (30-135)||(44193448-44193553)
chr1 (37-100)||(7064029-7064092)
[»] chr8 (6 HSPs)
chr8 (32-135)||(25336120-25336223)
chr8 (32-121)||(5557119-5557208)
chr8 (32-126)||(20811015-20811109)
chr8 (21-107)||(25004005-25004090)
chr8 (32-120)||(3166424-3166512)
chr8 (41-121)||(4844424-4844504)
[»] chr7 (8 HSPs)
chr7 (32-126)||(19802243-19802337)
chr7 (32-126)||(21959205-21959299)
chr7 (21-108)||(3737876-3737962)
chr7 (32-126)||(42786498-42786592)
chr7 (32-126)||(48477394-48477488)
chr7 (33-130)||(3079019-3079116)
chr7 (38-107)||(20920353-20920422)
chr7 (32-111)||(4340539-4340618)
[»] scaffold0158 (2 HSPs)
scaffold0158 (32-111)||(1-80)
scaffold0158 (32-126)||(37442-37536)
[»] chr5 (4 HSPs)
chr5 (32-121)||(41527873-41527962)
chr5 (37-121)||(22301883-22301967)
chr5 (31-111)||(26075651-26075731)
chr5 (46-121)||(23213637-23213713)
[»] scaffold0043 (1 HSPs)
scaffold0043 (32-111)||(70138-70217)
[»] scaffold0024 (1 HSPs)
scaffold0024 (31-111)||(63462-63542)
[»] scaffold0060 (1 HSPs)
scaffold0060 (32-106)||(45204-45278)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 24627335 - 24627639
Alignment:
Q  13 acctgtgcatctgagataaaaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctat 112  Q
    |||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||    
T  24627335 acctatgcatctgaaataaaa-taaaaaggattggggtgacacatgatgtctcagcgagttccacctatcctaggatgtaggcaatctcagggaacctat 24627433  T
Q  113 aatcgccatatgttctaatctcattttgggtttatatcgttcttatctgc--------gcgatcaggggaaaactaagaccgctatttctccaaaacagc 204  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||        ||||||||||||||||||||||| ||||||||||||||||||    
T  24627434 gatcgccatatgttctaatctcattttgggtttatattgttcttatctgcataacagagcgatcaggggaaaactaagaccactatttctccaaaacagc 24627533  T
Q  205 ttatttcagcttattgattctgcctctaacttttacgtcctgatttcaaccaaactcttgctcaaccatgtgggcatccataatcaatcctggaatcatt 304  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24627534 ttatttcagcttattgattccgcctctaacttttacgtcctgatttcaaccaaactcttgctcaaccatgtgggcatccataatcaatcctggaatcatt 24627633  T
Q  305 tataac 310  Q
    ||||||    
T  24627634 tataac 24627639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 1505334 - 1505437
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||| |||||||||||| ||| ||||||| || |||||||||||||| |||| |||| ||||||||||||||||||  |||||||| ||||||||     
T  1505334 aaataaaagggattggggtgagacaagatgtcttagtgagttccacctatcctaggttgtaggcaatctcagggaacctaggatcgccatctgttctaaa 1505433  T
Q  132 ctca 135  Q
    ||||    
T  1505434 ctca 1505437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 13701952 - 13702055
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||| |||||||||||| | | |||||||||| |||||||||||||| |||| |||| ||||||||||| ||||||  |||||||| ||||||||     
T  13701952 aaataaaagggattggggtgagataagatgtctcagtgagttccacctatcctaggttgtacgcaatctcaggaaacctacgatcgccatctgttctaaa 13702051  T
Q  132 ctca 135  Q
    ||||    
T  13702052 ctca 13702055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 13712445 - 13712548
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||| |||||||||||| | | |||||||||| |||||||||||||| |||| |||| ||||||||||| ||||||  |||||||| ||||||||     
T  13712445 aaataaaagggattggggtgagataagatgtctcagtgagttccacctatcctaggttgtacgcaatctcaggaaacctacgatcgccatctgttctaaa 13712544  T
Q  132 ctca 135  Q
    ||||    
T  13712545 ctca 13712548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 5599246 - 5599325
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaaccta 111  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||| ||||| |||| |||| |||| |||||||||||||    
T  5599246 aaataaaaaggattggggtgagacaagatgtctcagtgagttccatctatcctaggttgtaggcaacctcagggaaccta 5599325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 6735832 - 6735729
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||| |||||||| ||| |||||||||||||| |||||||||||||| || | |||| | ||||| ||||||||||  ||||||||||| |||||     
T  6735832 aaataaaatggattgggatgagacatgatgtctcagtgagttccacctatcctaagctgtaggaaatcttagggaacctaggatcgccatatgctctaaa 6735733  T
Q  132 ctca 135  Q
    ||||    
T  6735732 ctca 6735729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 2895234 - 2895140
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    |||||||| |||||||||||| ||| |||||||||| |||||||||||||| |||| | || |||| ||| |||||||||  |||||||| ||||    
T  2895234 aaataaaagggattggggtgagacaagatgtctcagtgagttccacctatcctaggctataggcaacctcggggaacctaggatcgccatctgtt 2895140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 5908492 - 5908586
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    |||||||| |||||||||||| ||| |||||||||| |||||||||||||| |||| | || |||| ||| |||||||||  |||||||| ||||    
T  5908492 aaataaaagggattggggtgagacaagatgtctcagtgagttccacctatcctaggctataggcaacctcggggaacctaggatcgccatctgtt 5908586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 1604780 - 1604700
Alignment:
Q  41 ggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccat 121  Q
    |||||||||||| ||| || ||||||| |||||||||||||| |||| |||| || |  ||||||||||||||||||||||    
T  1604780 ggattggggtgagacaggaggtctcagtgagttccacctatcctaggttgtaggcgacttcagggaacctataatcgccat 1604700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 5579196 - 5579109
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgcca 120  Q
    ||||||||||||||||| ||| |||  ||||||| | ||||||||||||||||||| |||| | |||||| |||||||||  |||||||    
T  5579196 aaataaaaaggattggg-tgagacaaaatgtctcggtgagttccacctatcataggctgtaggaaatctcggggaacctaggatcgcca 5579109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 3329548 - 3329498
Alignment:
Q  37 aaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagg 87  Q
    |||||||||||||||| ||| |||||||||| |||||||||||||| ||||    
T  3329548 aaaaggattggggtgagacaagatgtctcagtgagttccacctatcttagg 3329498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 4852035 - 4852129
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    |||||||| |||||||| ||| ||| ||||| |||  |||||||||||||| |||| |||| |||| ||| |||||||||  |||||||| ||||    
T  4852035 aaataaaagggattgggatgagacaagatgtttcactgagttccacctatcctaggttgtaggcaacctcggggaacctaggatcgccatttgtt 4852129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 7451206 - 7451264
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtg 90  Q
    ||||||||||||||||||||| |||| | |||||||  ||||||||||||| |||||||    
T  7451206 aaataaaaaggattggggtgagacataaggtctcagtaagttccacctatcctagggtg 7451264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 31663937 - 31663869
Alignment:
Q  62 tctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaa 130  Q
    |||||| |||||||||||||| |||| ||||  |||||||| | ||||||| |||| ||||||||||||    
T  31663937 tctcagtgagttccacctatcctaggttgtagacaatctcaagaaacctatgatcgacatatgttctaa 31663869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 20349650 - 20349574
Alignment:
Q  23 ctgagataaaaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatct 100  Q
    |||| |||||||||||| | |||||| ||| ||| |||||||||| |||||||||||||  |||| |||| |||||||    
T  20349650 ctgaaataaaaataaaa-gaattgggatgagacaagatgtctcagtgagttccacctatactaggctgtaggcaatct 20349574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 2747164 - 2747061
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||| |||||||||||| ||| |||||||||| |||||||||||||| |||| |||| ||||||||||||||||||  ||||||||||||| ||||    
T  2747164 aaataaaagggattggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaatctcagggaacctaggatcgccatatgttttaat 2747065  T
Q  132 ctca 135  Q
    ||||    
T  2747064 ctca 2747061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 18111086 - 18111189
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||| |||| ||||||| |||||||||||||| |||||||||||||| |||| |||| ||||| ||||||||||||  |||||||| |||||||||    
T  18111086 aaataaaagggatcggggtgagacatgatgtctcagtgagttccacctatcctaggttgtaggcaatatcagggaacctaggatcgccatctgttctaat 18111185  T
Q  132 ctca 135  Q
    ||||    
T  18111186 ctca 18111189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 5835271 - 5835374
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||| |||||||||||| | | |||||||||| |||||||||||||| |||| | || ||||||||||||||||||  |||| ||||||||||||     
T  5835271 aaataaaagggattggggtgagataggatgtctcagtgagttccacctatcctaggctataggcaatctcagggaacctaggatcgtcatatgttctaaa 5835370  T
Q  132 ctca 135  Q
    ||||    
T  5835371 ctca 5835374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 28034333 - 28034436
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||| |||||||||||| ||| |||||||||| || ||||||||||| |||| |||  ||||||||| ||||||||  |||||||||||||||||     
T  28034333 aaataaaagggattggggtgagacaagatgtctcagtgaattccacctatcctaggttgttggcaatctcaaggaacctaggatcgccatatgttctaaa 28034432  T
Q  132 ctca 135  Q
    ||||    
T  28034433 ctca 28034436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 19440710 - 19440799
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccat 121  Q
    |||||||| |||||| ||||| |||||||||||||| |||||||||||||| |||| |||| ||||||||| ||||||||  ||||||||    
T  19440710 aaataaaagggattgaggtgagacatgatgtctcagtgagttccacctatcctaggctgtaggcaatctcaaggaacctaggatcgccat 19440799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 37489369 - 37489467
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaa 130  Q
    |||||||| |||||||||||| ||| |||||||| | |||||||||||||| |||| |||| ||||||||||| ||||||  ||||||||  |||||||    
T  37489369 aaataaaagggattggggtgagacaagatgtctcggtgagttccacctatcctaggttgtaggcaatctcaggaaacctaggatcgccatccgttctaa 37489467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 19359959 - 19359870
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccat 121  Q
    |||||||||| |||||||||| |||  ||||||||| |||||||||||||| |||| |||| |||||||| |||||||||  ||||||||    
T  19359959 aaataaaaagaattggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctaggatcgccat 19359870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 5938380 - 5938483
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||| |||||||||||| | | |||||||||| |||||||||||||| |||| | || ||||| ||||||||  ||  |||||||||||||||||     
T  5938380 aaataaaagggattggggtgagataggatgtctcagtgagttccacctatcctaggctataggcaatttcagggaaattaggatcgccatatgttctaaa 5938479  T
Q  132 ctca 135  Q
    ||||    
T  5938480 ctca 5938483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 14521738 - 14521644
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    ||||||||||||||||||||| |||  |||||| || |||||||||||||| |||| |||| |||||||| ||||| |||  |||||||| ||||    
T  14521738 aaataaaaaggattggggtgagacaaaatgtcttagtgagttccacctatcctaggctgtaggcaatctcggggaatctaagatcgccatctgtt 14521644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 27170125 - 27170209
Alignment:
Q  37 aaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccat 121  Q
    |||| ||||| ||||| |||||||||||||| |||||||| |||||||||| || | ||||||||  ||||||||| ||| ||||    
T  27170125 aaaatgattgaggtgagacatgatgtctcagtgagttccatctatcataggttgaaggcaatctctaggaacctatgatcaccat 27170209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 7782837 - 7782922
Alignment:
Q  41 ggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    ||||| |||||| ||| ||||||| || |||||||||||||| || | | || |||||||| |||||||||| ||| |||| ||||    
T  7782837 ggattagggtgagacacgatgtcttagtgagttccacctatcctaagctataggcaatctcggggaacctatgatcaccatttgtt 7782922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 31347471 - 31347376
Alignment:
Q  35 taaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaa 130  Q
    |||||||||||||||||| ||| |||||||||| |||||||||||||| |||| |||| |||||||||| |||||||  |||||||||||||||||    
T  31347471 taaaaaggattggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaatctcagagaacctaggatcgccatatgttctaa 31347376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 31314640 - 31314743
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    ||||||||  ||| ||||||| ||||||||| |||| |||||||||||||| |||| |||| ||||||||||||||||||  |||||||| |||||||||    
T  31314640 aaataaaagagatcggggtgagacatgatgtttcagtgagttccacctatcctaggttgtaggcaatctcagggaacctaggatcgccatctgttctaat 31314739  T
Q  132 ctca 135  Q
    ||||    
T  31314740 ctca 31314743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 38211348 - 38211436
Alignment:
Q  37 aaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgt 125  Q
    |||||||||||||||| ||| ||| |||||| |||||||||||||| || | |||| |||||||  |||| ||||| ||||||||||||    
T  38211348 aaaaggattggggtgagacaggatctctcagtgagttccacctatcctaagttgtaggcaatcttggggagcctatgatcgccatatgt 38211436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 17863237 - 17863309
Alignment:
Q  45 tggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcg 117  Q
    |||||||| |||||||||||||| |||||||||||||  |||| | || |||||||| |||||||||| ||||    
T  17863237 tggggtgagacatgatgtctcagtgagttccacctattctaggttatatgcaatctcggggaacctatgatcg 17863309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 29742307 - 29742371
Alignment:
Q  62 tctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    |||||| |||||||||||||  |||| |||| ||||||||||||||||||| |||||||| ||||    
T  29742307 tctcagtgagttccacctattttaggttgtaggcaatctcagggaacctatgatcgccatctgtt 29742371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 18010915 - 18010992
Alignment:
Q  41 ggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgcc 119  Q
    |||||||||||| ||| |||||||||| |||||||||||||| |||| || | |||||||| || ||| ||||||||||    
T  18010915 ggattggggtgagacaggatgtctcagtgagttccacctatcctaggctgcaggcaatctc-ggcaacttataatcgcc 18010992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 29747149 - 29747229
Alignment:
Q  41 ggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccat 121  Q
    |||||||||||| ||| |||||||||| ||||||||| |||| |||| |||| || ||||| ||||| |||| ||| ||||    
T  29747149 ggattggggtgagacaggatgtctcagtgagttccacatatcctaggttgtaggcgatctcggggaatctatgatcaccat 29747229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 27085368 - 27085418
Alignment:
Q  37 aaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagg 87  Q
    |||||||||||||||| |||| |||||| || ||||||||| |||||||||    
T  27085368 aaaaggattggggtgaaacataatgtcttagtgagttccacatatcatagg 27085418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 33125466 - 33125425
Alignment:
Q  41 ggattggggtgacacatgatgtctcagcgagttccacctatc 82  Q
    |||||||||||| ||||||||||| || ||||||||||||||    
T  33125466 ggattggggtgagacatgatgtcttagtgagttccacctatc 33125425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 89835 - 89938
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||| ||||||| |||| ||| |||||||||| |||||||||||||| |||| |||| |||||| |||||||||||  |||||||||||||||||     
T  89835 aaataaaagggattggagtgagacaagatgtctcagtgagttccacctatcctaggctgtaggcaatcacagggaacctaggatcgccatatgttctaaa 89934  T
Q  132 ctca 135  Q
    ||||    
T  89935 ctca 89938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 5131429 - 5131326
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||| |||||||||||| ||| |||||||||| |||||||||||||| |||| |||| |||||||| |||||||||  |||||||| ||||||||     
T  5131429 aaataaaagggattggggtgagacaagatgtctcagtgagttccacctatcctaggttgtaggcaatctcggggaacctaggatcgccatctgttctaaa 5131330  T
Q  132 ctca 135  Q
    ||||    
T  5131329 ctca 5131326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 31113720 - 31113617
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||||| |||| |||| ||||||||| ||||||||  |||  ||||||||||||     
T  31113720 aaataaaagggattggggtgagacatgatgtctcagtgagttccacctatcctaggctgtaggcaatctcaaggaacctaggatcaacatatgttctaaa 31113621  T
Q  132 ctca 135  Q
    ||||    
T  31113620 ctca 31113617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 6406186 - 6406292
Alignment:
Q  16 tgtgcatctgagataaaaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataat 115  Q
    ||||||||||| |||||| ||||| |||||||||||| |||||||||||||| ||||| |||||||| |||       |||||||| |||||||||  ||    
T  6406186 tgtgcatctgaaataaaa-taaaagggattggggtgagacatgatgtctcagtgagttgcacctatcctag-------gcaatctcggggaacctaggat 6406277  T
Q  116 cgccatatgttctaa 130  Q
    || ||||||||||||    
T  6406278 cgtcatatgttctaa 6406292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 33301217 - 33301138
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaaccta 111  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||| ||||| |||| |||| |||| ||  |||||||||    
T  33301217 aaataaaaaggattggggtgagacaagatgtctcagtgagttccatctatcctaggttgtaggcaacctgggggaaccta 33301138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 28144384 - 28144478
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    ||||||||||||||||| ||| |||  ||||||||| |||||||||||||  |||  |||| |||||||| |||||||||  |||||||| ||||    
T  28144384 aaataaaaaggattgggctgagacaaaatgtctcagtgagttccacctatactagactgtaggcaatctcggggaacctaggatcgccatctgtt 28144478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 34256282 - 34256188
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    |||||||||| |||||||||| |||  ||| ||||| |||||||||||||| |||| |||| |||||||| ||||| |||  |||||||| ||||    
T  34256282 aaataaaaagaattggggtgagacaaaatgcctcagtgagttccacctatcctaggctgtaggcaatctcggggaatctaggatcgccatctgtt 34256188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 8519272 - 8519351
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaaccta 111  Q
    ||||||||||||||| ||||| |||  |||||| || ||||| |||||||| |||| |||| ||||||||  ||||||||    
T  8519272 aaataaaaaggattgaggtgagacaaaatgtctaagtgagtttcacctatcttaggttgtaggcaatctctaggaaccta 8519351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 51843938 - 51844041
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||||| || |||||| ||||||||||||| ||||  |||| ||||||||||||     
T  51843938 aaataaaaataattggggtgagacatgatgtctcagtgagttccacctatcttaaggtgtaggcaatctcagggaccctaagatcgtcatatgttctaaa 51844037  T
Q  132 ctca 135  Q
    ||||    
T  51844038 ctca 51844041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 15088256 - 15088354
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaa 130  Q
    |||||||| |||||||||||| ||| |||||||||| |||||||||||||| |||| |||| |||||| |||||||||||  |||||||| ||||||||    
T  15088256 aaataaaagggattggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaatcgcagggaacctaggatcgccatctgttctaa 15088354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 22210864 - 22210962
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaa 130  Q
    |||||||| |||||||||||| ||| |||||||||| |||||||||||||| |||| |||| |||||| |||||||||||  |||||||| ||||||||    
T  22210864 aaataaaagggattggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaatcgcagggaacctaggatcgccatctgttctaa 22210962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 1991682 - 1991595
Alignment:
Q  30 aaaaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcg 117  Q
    |||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| | |||| |||||||| || ||||||| ||||    
T  1991682 aaaaataaaagggattggggtgacgcatgatgtctcagtgagttccacctatcataagttgtacgcaatctcgggaaacctatgatcg 1991595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 22219614 - 22219712
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaa 130  Q
    |||||||| |||||||||||| ||| |||||||||| ||||| |||||||| |||| |||| |||||| |||||||||||  |||||||| ||||||||    
T  22219614 aaataaaagggattggggtgagacaggatgtctcagtgagttgcacctatcctaggttgtaggcaatcgcagggaacctaggatcgccatctgttctaa 22219712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 14150207 - 14150123
Alignment:
Q  37 aaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccat 121  Q
    |||||||||||||||| |||||||||||| | |||||||||||||| ||   |||| |||||||| |||||||||||||||||||    
T  14150207 aaaaggattggggtgagacatgatgtctcggtgagttccacctatcctaaactgtaggcaatctcggggaacctataatcgccat 14150123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 7898985 - 7899088
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||| |||||||||||| ||| |||||||||| |||||||||||||| |||  |||| ||||||||| ||||||||  |||| ||| ||||||||     
T  7898985 aaataaaagggattggggtgagacaagatgtctcagtgagttccacctatcctagattgtaggcaatctcaaggaacctaggatcgacatttgttctaaa 7899084  T
Q  132 ctca 135  Q
    ||||    
T  7899085 ctca 7899088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 14115633 - 14115539
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    |||||||| |||||||||||| ||| |||||||||||| |||||||||||| |||| || |||||| ||| || ||||||| |||||||| ||||    
T  14115633 aaataaaagggattggggtgagacaagatgtctcagcgcgttccacctatcctaggctgcaagcaacctcgggaaacctatgatcgccatttgtt 14115539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 22207301 - 22207399
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaa 130  Q
    |||||||| |||||||||||| ||| |||||||||| |||||||||||||| |||| |||| |||||  |||||||||||  |||||||| | ||||||    
T  22207301 aaataaaagggattggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaattgcagggaacctaagatcgccatctattctaa 22207399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 44193553 - 44193448
Alignment:
Q  30 aaaaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttcta 129  Q
    |||||||||| |||||||||||| ||   ||||||| | |||||||||||||| |||| |||| ||||||||| ||||||||  |||||||| | |||||    
T  44193553 aaaaataaaagggattggggtgagacgaaatgtctcggtgagttccacctatcctaggttgtaggcaatctcaaggaacctaggatcgccatctattcta 44193454  T
Q  130 atctca 135  Q
    | ||||    
T  44193453 aactca 44193448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 7064029 - 7064092
Alignment:
Q  37 aaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatct 100  Q
    ||||||||| |||||| |||| ||||||||| |||||||||||||| |||| |||| |||||||    
T  7064029 aaaaggattagggtgagacataatgtctcagtgagttccacctatcctaggttgtaggcaatct 7064092  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 25336120 - 25336223
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaat 131  Q
    |||||||| | |||||||||| ||| |||||| ||| |||||||||||||| |||| | || ||||||||||||||||||  |||||||||||||||||     
T  25336120 aaataaaaggaattggggtgagacaggatgtcccagtgagttccacctatcctaggctataggcaatctcagggaacctaggatcgccatatgttctaaa 25336219  T
Q  132 ctca 135  Q
    ||||    
T  25336220 ctca 25336223  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 5557119 - 5557208
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccat 121  Q
    |||||||||| |||||||||| |||  ||||||||| |||||||||||||| |||| |||| |||||||| |||||||||  ||||||||    
T  5557119 aaataaaaagaattggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctaggatcgccat 5557208  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 20811109 - 20811015
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    |||| ||| |||||||||||| |||  ||||||||| |||||||||||||| |||| |||| |||||||||| |||||||  |||||||| ||||    
T  20811109 aaatgaaagggattggggtgagacagaatgtctcagtgagttccacctatcctaggttgtaggcaatctcagtgaacctaggatcgccatctgtt 20811015  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 25004090 - 25004005
Alignment:
Q  21 atctgagataaaaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaa 107  Q
    |||||| |||||||||||  |||||||||||| |||  ||||||||| |||||||||||||| |||| |||| ||||||||||||||    
T  25004090 atctgaaataaaaataaag-ggattggggtgagacagaatgtctcagtgagttccacctatcctaggctgtaggcaatctcagggaa 25004005  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 3166512 - 3166424
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgcca 120  Q
    ||||||||  ||||||||||| ||||||||||||   |||||||| ||||| |||| |||| ||||||||||||||||||  |||||||    
T  3166512 aaataaaagtgattggggtgagacatgatgtctcgatgagttccatctatcctaggttgtaggcaatctcagggaacctaggatcgcca 3166424  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 4844504 - 4844424
Alignment:
Q  41 ggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccat 121  Q
    |||||||||||| ||| |||| | ||| |||||||||||||| |||| |||| ||||||||||||||||||  ||||||||    
T  4844504 ggattggggtgagacaggatgccgcagtgagttccacctatcctaggttgtaggcaatctcagggaacctaggatcgccat 4844424  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 19802243 - 19802337
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    ||||||||||||||||||||| |||  ||||||||| |||||||||||||| |||| |||| |||||||| |||||||||  |||||||| ||||    
T  19802243 aaataaaaaggattggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctacgatcgccatctgtt 19802337  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 21959299 - 21959205
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    |||||||| |||||||||||| |||  ||||||||| |||||||||||||| |||| |||| |||||||| |||||||||  |||||||| ||||    
T  21959299 aaataaaatggattggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctaggatcgccatttgtt 21959205  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 3737962 - 3737876
Alignment:
Q  21 atctgagataaaaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaac 108  Q
    |||||| |||||||||||  |||||||||||| |||||||||||||| |||||||||||||  |||| |||| || ||||||||||||    
T  3737962 atctgaaataaaaataaag-ggattggggtgagacatgatgtctcagtgagttccacctattctaggttgtaggcgatctcagggaac 3737876  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 42786592 - 42786498
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    |||||||| |||||||||||| ||| |||||||||| |||||||||||||| |||| | || |||| ||| |||||||||  |||||||| ||||    
T  42786592 aaataaaagggattggggtgagacaagatgtctcagtgagttccacctatcctaggctataggcaacctcggggaacctaggatcgccatctgtt 42786498  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 48477394 - 48477488
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    |||||||| |||||||||||| ||| |||||||||| |||||||||||||| |||| | || |||| ||| |||||||||  |||||||| ||||    
T  48477394 aaataaaagggattggggtgagacaagatgtctcagtgagttccacctatcctaggctataggcaacctcggggaacctaggatcgccatctgtt 48477488  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 3079116 - 3079019
Alignment:
Q  33 aataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgttctaa 130  Q
    ||||||| |||||||| ||| ||| |||||||||  |||||||||||||| ||||  ||| | |||| |||||||||||  |||||||| ||||||||    
T  3079116 aataaaagggattgggctgagacaggatgtctcaatgagttccacctatcctaggtagtaggaaatcgcagggaacctaggatcgccatctgttctaa 3079019  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 20920422 - 20920353
Alignment:
Q  38 aaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaa 107  Q
    ||||||||||| |||  ||||||||||||| |||||||||||||| |||| |||| |||||||| |||||    
T  20920422 aaaggattgggatgaggcatgatgtctcagtgagttccacctatcctaggttgtaggcaatctcggggaa 20920353  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 4340539 - 4340618
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaaccta 111  Q
    ||||||||| ||||||||||| |||  ||||||||| |||||||||||||| |||| |||| |||| ||| || ||||||    
T  4340539 aaataaaaatgattggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaacctcgggaaaccta 4340618  T

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Target: scaffold0158 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 80 - 1
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaaccta 111  Q
    ||||||||||||||||||||| |||  ||||||||| |||||||||||||| |||| |||| |||||||| |||||||||    
T  80 aaataaaaaggattggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaaccta 1  T

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Target: scaffold0158; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 37536 - 37442
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccatatgtt 126  Q
    |||||||||| ||| |||||| |||  ||||||||   ||||||||||||| |||| ||||  ||||||| ||||||||| ||||||||| ||||    
T  37536 aaataaaaagaattagggtgagacaaaatgtctcatttagttccacctatcctaggctgtagacaatctcggggaacctacaatcgccatctgtt 37442  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 41527873 - 41527962
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccat 121  Q
    |||||||||| |||||||||| |||  ||||||||| |||||||||||||| |||| |||| |||||||| |||||||||  ||||||||    
T  41527873 aaataaaaagaattggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctaggatcgccat 41527962  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 22301883 - 22301967
Alignment:
Q  37 aaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaacctataatcgccat 121  Q
    |||||||||||| ||| ||||||||||| || |||||||||||||| || | |||| |||||  | |||||||||| ||||||||    
T  22301883 aaaaggattgggatgagacatgatgtcttagtgagttccacctatcctaagttgtaggcaattgcggggaacctatgatcgccat 22301967  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 26075731 - 26075651
Alignment:
Q  31 aaaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaaccta 111  Q
    ||||||||| |||||||||||| ||| ||||| |||| |||||||||| ||| || | |||| |||||||| | |||||||    
T  26075731 aaaataaaagggattggggtgagacaggatgtatcagtgagttccaccaatcctatgttgtaggcaatctcggagaaccta 26075651  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 23213637 - 23213713
Alignment:
Q  46 ggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcaggg-aacctataatcgccat 121  Q
    ||||||| |||| |||||| || |||||||||||||| |||| | || |||||||| ||| ||||||| ||||||||    
T  23213637 ggggtgagacattatgtcttagtgagttccacctatcctaggttttaggcaatctcggggaaacctatgatcgccat 23213713  T

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Target: scaffold0043 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 70217 - 70138
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaaccta 111  Q
    |||||||| ||||| |||||| ||| |||||||||| |||||||||||||| |||| || | |||||||||||| |||||    
T  70217 aaataaaagggattcgggtgagacaagatgtctcagtgagttccacctatcctaggatgcaggcaatctcagggtaccta 70138  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 63462 - 63542
Alignment:
Q  31 aaaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcagggaaccta 111  Q
    |||||||||  ||||||||||  ||| |||||||||| |||||||||||||| || | |||| || ||||| |||||||||    
T  63462 aaaataaaagagattggggtgtgacaggatgtctcagtgagttccacctatcctaagttgtatgctatctcggggaaccta 63542  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 45278 - 45204
Alignment:
Q  32 aaataaaaaggattggggtgacacatgatgtctcagcgagttccacctatcatagggtgtaagcaatctcaggga 106  Q
    |||||||| |||||||||||| |||  |||||| || ||||||||| || | |||| |||| |||||||||||||    
T  45278 aaataaaagggattggggtgagacaaaatgtcttagtgagttccacataccctaggttgtaggcaatctcaggga 45204  T

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