View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_high_30 (Length: 283)
Name: NF19236_high_30
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 7018609 - 7018807
Alignment:
| Q |
18 |
caaccaaggcttaaactctccttaatctatgtccttgtgtcaacttgctgatgagcgaccaaggttcaaccttttctttgactgacgtcgttgtgccgtt |
117 |
Q |
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| T |
7018609 |
caaccaaggcttaaactctccttaatctatgtccttgtgtcaacttgatgatgagcgaccaaggttcaaccttttctttgactgacgtcgttgtgccgtt |
7018708 |
T |
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| Q |
118 |
atggtgatgagagaccaagacccaag--ctctccttcgcacaacgtccttgtgtgacatggtgatgagtgactaagctcatgatctccttcatctaacg |
214 |
Q |
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| T |
7018709 |
atggtgatgagagaccaagacccaagctctctccttcgcacaacgtccttgtgtgacatggtgatgagtgactaagctcatgatctccttcatctaacg |
7018807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 7019044 - 7019093
Alignment:
| Q |
118 |
atggtgatgagagaccaagacccaagctctccttcgcacaacgtccttgtg |
168 |
Q |
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| T |
7019044 |
atggtgatgagtgaccaagactcaagctctccttcg-accacgtccttgtg |
7019093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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