View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_high_31 (Length: 271)
Name: NF19236_high_31
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_high_31 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 28071990 - 28071733
Alignment:
| Q |
14 |
attattctgaaaaattgaaggtaacattgattagagataaggctttaaaagagtttataaagcttaaacaattgtcacttcataagtcgaattttgtagg |
113 |
Q |
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| T |
28071990 |
attattctgaaaaattgaaggtaacattgattagagataaggctttaaaagagtttataaagcttaaacaattgtcacttcataagtcgaattttgtagg |
28071891 |
T |
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| Q |
114 |
gatgagttaggcctaaaatctaatatggtgtcaatttctacaataaatgcccaatagccttggacacgaataggtgtattggaaaaagtccaagtcccgt |
213 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28071890 |
gatgagttaggcctaaaacctaatgtggtgtcaatttctacaataaatgcccaatagccttggacacgaataggtgtattggaaaaagtccaagtccagt |
28071791 |
T |
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| Q |
214 |
attggctagtgatgcaacttaaataaagctttcgcaatcctctctttacaattcgatt |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28071790 |
attggctagtgatgcaacttaaataaagctttcgcaatcctctctttacaattcgatt |
28071733 |
T |
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