View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19236_high_4 (Length: 564)
Name: NF19236_high_4
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_high_4 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 100 - 564
Target Start/End: Original strand, 41344409 - 41344872
Alignment:
| Q |
100 |
gagagaactcacacttcttgttgcattggcggcacaggatgtctaaaggatactcctcttcatgaccacccttacagtatttgcagctgcagtaagaaca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41344409 |
gagagaactcacacttcttgttgcattggcggcacaggatgtctaaaggatactcctcttcatgaccacccttacagtatttgcagctgcagtaagaaca |
41344508 |
T |
|
| Q |
200 |
taaccaatggtcgtcgttttcctgagaaaaaccctgcggtataaaaacgaaaagaaacaattcacacttatttattaattcatgtgcaagacccttcttg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41344509 |
taaccaatggtcgtcgttttcctgagaaaaaccctgcggtataaaaacgaaaagaaacaattcacacttatttattaattcatgtgcaagacccttcttg |
41344608 |
T |
|
| Q |
300 |
taagcaaaagnnnnnnnnngtaaattaattacctgtatgaaagcacaggaacgatgataagtggagggacaatttgtgcagttaataaattccccttcat |
399 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41344609 |
taagcaaaagaaaaaaaa-gtaaattaattacctgtatgaaagcacaggaacgatgataagtggagggacaatttgtgcagttaataaattccccttcat |
41344707 |
T |
|
| Q |
400 |
cttctccttttccacaaacgaaacaaacaatgtcatgtatgggagcatacatgaacatgtctcgacgtttttgttcatcctctttcaaccacttactaat |
499 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41344708 |
cttctccctttccacaaactaaacaaacaatgtcatgtatgggagcatacatgaacatgtctcgacgtttttgttcatcctctttcaaccacttactaat |
41344807 |
T |
|
| Q |
500 |
caggatgttttggaggacggacttccgtgtcgccaccaaaatgcgtttgtatggttgtatatcct |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41344808 |
caggatgttttggaggacggacttccgtgtcgccaccaaaatgcgtttgtatggttgtatatcct |
41344872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 41344273 - 41344358
Alignment:
| Q |
16 |
ccaatgacctacaaaatcattttggaaaccacttcaatgagttatttttcaagtaccaatatataatgctaactctttcaacttga |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41344273 |
ccaatgacctacaaaatcattttggaaaccacttcaatgagttatttttcaagtaccaatatataatgctaactctttcaacttga |
41344358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 433
Target Start/End: Complemental strand, 5743972 - 5743938
Alignment:
| Q |
399 |
tcttctccttttccacaaacgaaacaaacaatgtc |
433 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
5743972 |
tcttctccttttccacaaactaaacaaacaatgtc |
5743938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 433
Target Start/End: Complemental strand, 5780931 - 5780897
Alignment:
| Q |
399 |
tcttctccttttccacaaacgaaacaaacaatgtc |
433 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
5780931 |
tcttctccttttccacaaactaaacaaacaatgtc |
5780897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 433
Target Start/End: Complemental strand, 5751762 - 5751729
Alignment:
| Q |
400 |
cttctccttttccacaaacgaaacaaacaatgtc |
433 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
5751762 |
cttctccttttccacaaactaaacaaacaatgtc |
5751729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 433
Target Start/End: Complemental strand, 5788721 - 5788688
Alignment:
| Q |
400 |
cttctccttttccacaaacgaaacaaacaatgtc |
433 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
5788721 |
cttctccttttccacaaactaaacaaacaatgtc |
5788688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University