View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_high_40 (Length: 248)
Name: NF19236_high_40
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 39580574 - 39580358
Alignment:
| Q |
14 |
cacagaggaaaacgatagcttatcaagaaagtggctaccagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatatt |
113 |
Q |
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| T |
39580574 |
cacaggggaaaacaatagcttatcaagaaagtggttaccagatgacagttacatcactaatccacataacgctaagaatggtttctttggaggtgatatt |
39580475 |
T |
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| Q |
114 |
atacgcactgcaggtgatgaatctgatggtccaaattcaaatatacatattggtccagacgctctttataatagtggcaaagagagtaaaaatggttcaa |
213 |
Q |
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| T |
39580474 |
aaacgcactgcaggtgatgaatctgatggtccaaattcaaatatacatattggtccagacgctctttataaaagtgccaaagagagtaaaaatggttcaa |
39580375 |
T |
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| Q |
214 |
acggtttaaacataagt |
230 |
Q |
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| T |
39580374 |
acggtttaaacataagt |
39580358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 49 - 230
Target Start/End: Complemental strand, 39544147 - 39543966
Alignment:
| Q |
49 |
taccagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatgaatctgatggtccaaa |
148 |
Q |
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| T |
39544147 |
taccagatgacagttatataactaatccacaaaacgctaagaatggttcctttgcagatgaaattaaacgcactgcaaataatacatatgaaggtccaaa |
39544048 |
T |
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| Q |
149 |
ttcaaatatacatattggtccagacgctctttataatagtggcaaagagagtaaaaatggttcaaacggtttaaacataagt |
230 |
Q |
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| T |
39544047 |
ttcaaatatatatattgctccggacgctgtttatgaaactgccaaagagagcaaaagcggttctaaaggtttaaacataagt |
39543966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 230
Target Start/End: Complemental strand, 39511121 - 39510927
Alignment:
| Q |
33 |
ttatcaagaaagtggctaccagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatg |
132 |
Q |
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||||||||| | ||| ||| ||||||||| ||||| ||||||||||| || || |||| ||||| |||||| |||||||| || | ||||| ||||| |
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| T |
39511121 |
ttatcaagagaatggttacgagatgacagatacataactaatccacaaaatgcgaagattggttcctttgg---tgatattaaacacgctgcaaatgatg |
39511025 |
T |
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| Q |
133 |
aatctgatggtccaaattcaaatatacatattggtccagacgctctttataatagtggcaaagagagtaaaaatggttcaaacggtttaaacataagt |
230 |
Q |
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| T |
39511024 |
aatctgatggtccaaattcaagtatatatattggtccagatattgtttataaaactggccaagagagtgcaaacggttcaaaaggtttaaacataagt |
39510927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 39524866 - 39524670
Alignment:
| Q |
34 |
tatcaagaaagtggctaccagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatga |
133 |
Q |
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| T |
39524866 |
tatcaagagaatggttaccagatgacagatatataactgatccccaaaacgctaagaatggttcctttgaaggtgatattaaacgcactgcaaatgatga |
39524767 |
T |
|
| Q |
134 |
atctgatggtccaaattcaaatatacatattggtccagacgctctttataatagtggcaaagagagtaaaaatggttcaaacggtttaaacataagt |
230 |
Q |
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| T |
39524766 |
atctgttgattcaaattcaaataaatacataggtccagatattgtttataaaactgccaaagtgagtgttaatggttcaatcggtttaaacataagt |
39524670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 201
Target Start/End: Complemental strand, 39575993 - 39575841
Alignment:
| Q |
49 |
taccagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatgaatctgatggtccaaa |
148 |
Q |
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||||||||||||| || | ||||||| ||| |||||||||||| | | ||||| ||||||||| |||||||||| |||| |||||||||||||| |
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| T |
39575993 |
taccagatgacagatatgtaactaatctacaaaacgctaagaattgctcctttgacggtgatattccacgcactgcaaatgatacgtctgatggtccaaa |
39575894 |
T |
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| Q |
149 |
ttcaaatatacatattggtccagacgctctttataatagtggcaaagagagta |
201 |
Q |
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| T |
39575893 |
ttcaaatcaatatattgctccagatattgtttataaaactggcaaagagagta |
39575841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 39521348 - 39521227
Alignment:
| Q |
52 |
cagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatgaatctgatggtccaaattc |
151 |
Q |
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||||||||||||| | ||||||||||| |||||||||||| | | ||||| | | ||||| |||||||||| |||| |||||||||||||||||| |
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| T |
39521348 |
cagatgacagttatgtaactaatccacaaaacgctaagaatcgctcctttgacgttcatattccacgcactgcaaatgatacatctgatggtccaaattc |
39521249 |
T |
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| Q |
152 |
aaatatacatattggtccagac |
173 |
Q |
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|||| | |||||| ||||||| |
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| T |
39521248 |
aaatcaatatattgctccagac |
39521227 |
T |
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