View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_high_50 (Length: 234)
Name: NF19236_high_50
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 27256091 - 27256303
Alignment:
| Q |
12 |
cacagactaagaact---taccagacaaatggagccaccttcgaaaattggtaacaatgtcttttggaatgnnnnnnnnnnnnngaaactttgaaagagt |
108 |
Q |
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| T |
27256091 |
cacagactaagaactaattaccagacaaatggagccaccttcgaaaattgctaacaatgtcttttggaatgttttttcttttttgaaactttgaaagagt |
27256190 |
T |
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| Q |
109 |
gagagtgtacatgcggtttaaaaatgagaatgttaactgcttttttgagttgatacacaaagataacaactacttaatgaatcggttatcatattatttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27256191 |
gagagtgtacatgcggtttaaaaatgagaatgttaactgcttttttgagttgatacacaaagataacaactacttaatgaatcggttatcatattatttt |
27256290 |
T |
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| Q |
209 |
tgtgataaatgca |
221 |
Q |
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||||||||||||| |
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| T |
27256291 |
tgtgataaatgca |
27256303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 21200060 - 21200270
Alignment:
| Q |
12 |
cacagactaagaacttaccagacaaatggagccaccttcgaaaattggtaacaatgtcttttggaatgnnnnnnnnnnnnn-gaaactttgaaagagtga |
110 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| |
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| T |
21200060 |
cacagactaagaacttaccaggcaaatggagccaccttcgaaaattgctaacaatgtcttttggaatgttttttctttttttgaaactttgaaagaatga |
21200159 |
T |
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| Q |
111 |
gagtgtacatgcggtttaaaaatgagaatgttaactgcttttttgagttgatacacaaagataacaactacttaatgaatcggttatcatattatttttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21200160 |
gagtgtacatgcggtttaaaaatgagaatgttaactgcttttttgagttgatacacaaagataacaactacttaatgaatcggttatcatattatttttg |
21200259 |
T |
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| Q |
211 |
tgataaatgca |
221 |
Q |
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||||||||||| |
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| T |
21200260 |
tgataaatgca |
21200270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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