View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_high_51 (Length: 227)
Name: NF19236_high_51
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 49433053 - 49433274
Alignment:
| Q |
1 |
cccaatgccatgagcgaattgacagtggtctccataagggcatgtgccagtttcctgccatttgttacagagctcagtcttgaacatcccctggttgtac |
100 |
Q |
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| T |
49433053 |
cccaatgccatgagcgaattgacagtggtctccataagggcatgtgccagtttcctgccatttgttacagagctcagtcttgaacatcccctggttgtac |
49433152 |
T |
|
| Q |
101 |
acaaccatctcaagaggctcttcctctttctgccctcctcgcacaaataccttttgctgcaagcatagtaacacaaaatttcaacaataatcaattcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49433153 |
acaaccatctcaagaggctcttcctctttctgccctcctcgcacaaataccttttgctgcaagcatagtaacacaaaatttcaacaataatcaattcttc |
49433252 |
T |
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| Q |
201 |
cgaatatcaacaatcaaatcta |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
49433253 |
cgaatatcaacaatcaaatcta |
49433274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 39170848 - 39170897
Alignment:
| Q |
2 |
ccaatgccatgagcgaattgacagtggtctccataagggcatgtgccagt |
51 |
Q |
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| T |
39170848 |
ccaatgccgtgagcaaattgacagtggtctccataagggcatgtgccagt |
39170897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 114
Target Start/End: Original strand, 39170894 - 39170934
Alignment:
| Q |
75 |
cagtcttgaacatcccctggttgtacac-aaccatctcaag |
114 |
Q |
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| T |
39170894 |
cagtcttgaacatcccctggttgtacacaaaccatctcaag |
39170934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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