View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_high_54 (Length: 207)
Name: NF19236_high_54
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 33682926 - 33683103
Alignment:
| Q |
18 |
gtaatcaaccaacattttaacaaattattttcttctctctaaaactcttaccctctaatattaatcccataatttctcctttatattatgctctattcta |
117 |
Q |
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| T |
33682926 |
gtaatcaaccaacattttaacaaattattttcttctctctaaaactcttaccctataatattaatcccataatttctcctttatattatgctctattcta |
33683025 |
T |
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| Q |
118 |
aatcattagaatactagtgaaaacttgaactttatcggttcatcactagaatccatttttcttttgtcaaagtataat |
195 |
Q |
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| T |
33683026 |
aatcattagaatactagtgaaaacttgaactttatcggttcatcactagaatccatttttcttttgtcaaagtataat |
33683103 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 6646724 - 6646643
Alignment:
| Q |
48 |
tcttctctctaaaactcttaccctctaatattaatcccataatttctcctttatattatgctctattctaaatcattagaat |
129 |
Q |
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||||||||||||||||||||| ||||||||| |||||| |||||||| ||| ||| |||||||||| |||||||||| |
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| T |
6646724 |
tcttctctctaaaactcttactctctaatatgcatcccacaatttctcttttgtatcggattctattctaattcattagaat |
6646643 |
T |
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