View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19236_low_10 (Length: 498)

Name: NF19236_low_10
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19236_low_10
NF19236_low_10
[»] chr7 (4 HSPs)
chr7 (18-498)||(28071197-28071677)
chr7 (306-342)||(1668359-1668395)
chr7 (299-363)||(34925254-34925318)
chr7 (273-368)||(23117277-23117372)
[»] chr2 (6 HSPs)
chr2 (317-368)||(29378603-29378654)
chr2 (269-368)||(38434153-38434252)
chr2 (241-362)||(27309609-27309730)
chr2 (273-342)||(44460379-44460448)
chr2 (320-363)||(35849472-35849515)
chr2 (322-363)||(24098479-24098520)
[»] chr5 (4 HSPs)
chr5 (269-335)||(42440139-42440205)
chr5 (266-342)||(20981311-20981387)
chr5 (316-368)||(29460718-29460769)
chr5 (308-360)||(33178492-33178544)
[»] chr3 (3 HSPs)
chr3 (218-302)||(28802757-28802841)
chr3 (269-342)||(36303135-36303208)
chr3 (273-341)||(50376278-50376346)
[»] chr8 (2 HSPs)
chr8 (299-362)||(26466092-26466155)
chr8 (315-363)||(26480711-26480759)
[»] chr6 (3 HSPs)
chr6 (316-361)||(25192095-25192140)
chr6 (290-342)||(29166807-29166859)
chr6 (299-363)||(31696625-31696689)
[»] chr4 (4 HSPs)
chr4 (317-363)||(48244389-48244435)
chr4 (298-342)||(30617213-30617257)
chr4 (269-333)||(34417866-34417930)
chr4 (320-364)||(42647473-42647517)
[»] chr1 (1 HSPs)
chr1 (309-363)||(10363450-10363504)
[»] scaffold0137 (1 HSPs)
scaffold0137 (322-363)||(36033-36074)


Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Original strand, 28071197 - 28071677
Alignment:
Q  18 aatggcaatcttctgctttctcaatctaatagcaggacattggtttatattcttgatagctctcccttgcctgtattacaatgtgagcatgtaagttttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071197 aatggcaatcttctgctttctcaatctaatagcaggacattggtttatattcttgatagctctcccttgcctgtattacaatgtgagcatgtaagttttc 28071296  T
Q  118 tgttacttcttaaacaagtttgtgttctacttatccattcatgttaaactcacaggtctttatttgtgctgccacatagtggctatagcagcacagttac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28071297 tgttacttcttaaacaagtttgtgttctacttatccattcatgttaaactcacaggtctttatttgtgctgccacatagtggctatagcagcacagttgc 28071396  T
Q  218 atagcggaattttaacaaaccagtactattccgcgatatatgatataatataaagtgttgtcaaatagcggttatggcagtgctataacattgtaacata 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071397 atagcggaattttaacaaaccagtactattccgcgatatatgatataatataaagtgttgtcaaatagcggttatggcagtgctataacattgtaacata 28071496  T
Q  318 gtggaatttgaacaaaccgctatttcccacaatctgcgattgacaatactgaaattatcttatgatattataactatagagtttagtaaaaagacaatag 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28071497 gtggaatttgaacaaaccgctatttcccacaatctgcgattgacaatactgaaattattttatgatattataactatagagtttagtaaaaagacaatag 28071596  T
Q  418 ttattcttaaaattcttttacatgaagggtgtagtctaaatccaaccctatgatttgagggatattcttgaaaagaccctc 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071597 ttattcttaaaattcttttacatgaagggtgtagtctaaatccaaccctatgatttgagggatattcttgaaaagaccctc 28071677  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 1668395 - 1668359
Alignment:
Q  306 cattgtaacatagtggaatttgaacaaaccgctattt 342  Q
    ||||||| |||||||||||||||||||||||||||||    
T  1668395 cattgtagcatagtggaatttgaacaaaccgctattt 1668359  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 34925318 - 34925254
Alignment:
Q  299 gctataacattgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattgacaa 363  Q
    |||||| ||||||| |||||  |||||||||||||| ||||||| |||| |||||| ||||||||    
T  34925318 gctatagcattgtagcatagcagaatttgaacaaactgctattttccacgatctgcaattgacaa 34925254  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 368
Target Start/End: Complemental strand, 23117372 - 23117277
Alignment:
Q  273 tgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattgacaatactg 368  Q
    |||||| |||||| || ||| |||| |||||| || ||| || ||| |||||||||||||||| |||||| || ||||| || |||||||| ||||    
T  23117372 tgttgtgaaatagtgggtatagcagcgctatagcactgtcacgtagcggaatttgaacaaaccactattttccgcaatccgcaattgacaacactg 23117277  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 29378603 - 29378654
Alignment:
Q  317 agtggaatttgaacaaaccgctatttcccacaatctgcgattgacaatactg 368  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  29378603 agtggaatttgaacaaaccgctatttcccacgatccgcgattgacaacactg 29378654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 368
Target Start/End: Original strand, 38434153 - 38434252
Alignment:
Q  269 aaagtgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattgacaatactg 368  Q
    |||||||||| |||||||| |||| ||| ||||||| || ||||||||||  |||||||||||||| ||||||| ||    |||||||||||||| ||||    
T  38434153 aaagtgttgttaaatagcgattatagcattgctatagcactgtaacatagcagaatttgaacaaactgctattttccgtgttctgcgattgacaacactg 38434252  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 362
Target Start/End: Original strand, 27309609 - 27309730
Alignment:
Q  241 tactattccgcgatatatgatataatataaagtgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctat 340  Q
    ||||||||  ||||| | ||| || ||||||||||||||||||||||| |||   ||||||||| || |||| |||||  |||| ||||||||||| |||    
T  27309609 tactattctacgatacacgatttagtataaagtgttgtcaaatagcggatataatagtgctatagcactgtagcatagcagaatatgaacaaaccgatat 27309708  T
Q  341 ttcccacaatctgcgattgaca 362  Q
    || |  ||||||| ||||||||    
T  27309709 tttcagcaatctgtgattgaca 27309730  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 44460379 - 44460448
Alignment:
Q  273 tgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctattt 342  Q
    ||||||||||||||  |||| || |||||  ||||||||| ||||||| |||||||||||||||||||||    
T  44460379 tgttgtcaaatagcaattattgcggtgcttcaacattgtagcatagtgaaatttgaacaaaccgctattt 44460448  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 320 - 363
Target Start/End: Complemental strand, 35849515 - 35849472
Alignment:
Q  320 ggaatttgaacaaaccgctatttcccacaatctgcgattgacaa 363  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||    
T  35849515 ggaatttgaacaaaccgctattttccacaatctgcaattgacaa 35849472  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 24098479 - 24098520
Alignment:
Q  322 aatttgaacaaaccgctatttcccacaatctgcgattgacaa 363  Q
    |||||||||||||| |||||| |||||||||| |||||||||    
T  24098479 aatttgaacaaacccctattttccacaatctgtgattgacaa 24098520  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 335
Target Start/End: Original strand, 42440139 - 42440205
Alignment:
Q  269 aaagtgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaacc 335  Q
    ||||| ||||||||||| || ||| |||||||||||||| |||| ||||| ||||||||||||||||    
T  42440139 aaagttttgtcaaatagaggctatagcagtgctataacactgtagcatagcggaatttgaacaaacc 42440205  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 20981311 - 20981387
Alignment:
Q  266 tataaagtgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctattt 342  Q
    |||||| | |||||||||  ||| ||| |||||||| || || ||| ||| |||||||||||||||||||| |||||    
T  20981311 tataaaatattgtcaaattacggctatagcagtgctctaccactgttacaaagtggaatttgaacaaaccgatattt 20981387  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 29460718 - 29460769
Alignment:
Q  316 tagtggaatttgaacaaaccgctatttcccacaatctgcgattgacaatactg 368  Q
    ||||||||||||||||||| ||||||| | |||||||| ||||||||| ||||    
T  29460718 tagtggaatttgaacaaactgctattt-caacaatctgtgattgacaacactg 29460769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 33178492 - 33178544
Alignment:
Q  308 ttgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattga 360  Q
    |||| ||||||| |||||| |||||||| ||||||  ||||||||||||||||    
T  33178492 ttgttacatagtcgaatttcaacaaacccctatttttcacaatctgcgattga 33178544  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 302
Target Start/End: Complemental strand, 28802841 - 28802757
Alignment:
Q  218 atagcggaattttaacaaaccagtactattccgcgatatatgatataatataaagtgttgtcaaatagcggttatggcagtgcta 302  Q
    |||||||||||||| ||||||| || | |||||||||||   || ||||||||||||||||||||||| || ||| |||| ||||    
T  28802841 atagcggaattttaccaaaccactattgttccgcgatatgctatttaatataaagtgttgtcaaatagtggctatagcagcgcta 28802757  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 36303135 - 36303208
Alignment:
Q  269 aaagtgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctattt 342  Q
    |||||||||||||||||| |  ||||  |||||||| |  ||||  |||| |||||||||||||||||||||||    
T  36303135 aaagtgttgtcaaatagctggaatggtggtgctatagcgctgtactatagcggaatttgaacaaaccgctattt 36303208  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 50376346 - 50376278
Alignment:
Q  273 tgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctatt 341  Q
    |||||||||||||| | ||  ||||||||||| || |||| ||||| ||||||| ||||||||| ||||    
T  50376346 tgttgtcaaatagcagctacagcagtgctatagcactgtagcatagcggaattttaacaaaccgttatt 50376278  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 26466092 - 26466155
Alignment:
Q  299 gctataacattgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattgaca 362  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||| ||| |||||  ||||||||    
T  26466092 gctatatcattgtagcatagtggaatttgaacaaaccgttattttccaaaatctatgattgaca 26466155  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 26480711 - 26480759
Alignment:
Q  315 atagtggaatttgaacaaaccgctatttcccacaatctgcgattgacaa 363  Q
    |||||||||||||||||| ||| ||||| ||||||||||  ||||||||    
T  26480711 atagtggaatttgaacaacccgttattttccacaatctgtaattgacaa 26480759  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 25192095 - 25192140
Alignment:
Q  316 tagtggaatttgaacaaaccgctatttcccacaatctgcgattgac 361  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||    
T  25192095 tagtggaatttgaatagaccgctatttcccacaatctgtgattgac 25192140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 29166807 - 29166859
Alignment:
Q  290 tatggcagtgctataacattgtaacatagtggaatttgaacaaaccgctattt 342  Q
    |||| ||| ||||||||| |||  ||||||||||||||||||||| |||||||    
T  29166807 tatgccagcgctataacactgttgcatagtggaatttgaacaaactgctattt 29166859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 31696689 - 31696625
Alignment:
Q  299 gctataacattgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattgacaa 363  Q
    |||||||  ||||| | ||||||||||||||||||||||||||| |  |||||  ||||||||||    
T  31696689 gctataatgttgtaccgtagtggaatttgaacaaaccgctattttctgcaatccacgattgacaa 31696625  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 48244435 - 48244389
Alignment:
Q  317 agtggaatttgaacaaaccgctatttcccacaatctgcgattgacaa 363  Q
    ||||||||||||||||||||||| || |||| |||||| ||||||||    
T  48244435 agtggaatttgaacaaaccgctaatttccactatctgcaattgacaa 48244389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 30617257 - 30617213
Alignment:
Q  298 tgctataacattgtaacatagtggaatttgaacaaaccgctattt 342  Q
    ||||||| ||||||  | |||||||||||||||||||||||||||    
T  30617257 tgctatagcattgttgcgtagtggaatttgaacaaaccgctattt 30617213  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 34417866 - 34417930
Alignment:
Q  269 aaagtgttgtcaaatagcggttatggcagtgctataacattgtaacatagtggaatttgaacaaa 333  Q
    |||||||||||||||||| | ||| || |||||||| ||||||| ||||| | |||| |||||||    
T  34417866 aaagtgttgtcaaatagccgctattgcggtgctatatcattgtagcatagcgaaattcgaacaaa 34417930  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 42647473 - 42647517
Alignment:
Q  320 ggaatttgaacaaaccgctatttcccacaatctgcgattgacaat 364  Q
    ||||||||||||||||||||||| |||| |||||||  |||||||    
T  42647473 ggaatttgaacaaaccgctattttccaccatctgcggatgacaat 42647517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 363
Target Start/End: Original strand, 10363450 - 10363504
Alignment:
Q  309 tgtaacatagtggaatttgaacaaaccgctatttcccacaatctgcgattgacaa 363  Q
    ||||| |||||||||||||||||||  ||||||| |||  |||||||||||||||    
T  10363450 tgtaatatagtggaatttgaacaaaatgctattttccatgatctgcgattgacaa 10363504  T

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Target: scaffold0137 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Complemental strand, 36074 - 36033
Alignment:
Q  322 aatttgaacaaaccgctatttcccacaatctgcgattgacaa 363  Q
    |||| |||||||||||||||| ||||||||||| ||||||||    
T  36074 aattggaacaaaccgctattttccacaatctgcaattgacaa 36033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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