View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_low_14 (Length: 433)
Name: NF19236_low_14
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 79 - 422
Target Start/End: Original strand, 10100312 - 10100652
Alignment:
| Q |
79 |
acatattttgtgatcataataataatgcattcatgagtaatgatctattatcgtatgtaaacatctactattgttcattcttcatattgcttttacaata |
178 |
Q |
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| T |
10100312 |
acatattttgtgatcataataat---gcattcatgagtaatgatccattatcgtatgtaaacatctactattgttcattcttcatattgcttttacaata |
10100408 |
T |
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| Q |
179 |
tttgcttttttc-taatctaaaatccactgatgtattaactcttttgcttaaaggaaaaccacccttcagcattggaaaattttgaaaaagtgatgaaca |
277 |
Q |
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| T |
10100409 |
tttgttttttttataatctaaaatccactgatgtattaactcttttgcttaaaggaaaaccatccttctgcattggaaaattttgaaaaagtgatgaaca |
10100508 |
T |
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| Q |
278 |
ttgcaagagagaaaaagattgttgtgttcttagattatgatggaacactctctcaaattgtcgatgatcctgataaagcttacatgactgatgctgtaag |
377 |
Q |
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| T |
10100509 |
ttgcaagagagaaaaagattgttgtgttcttagattatgatggaacactctctcaaattgtcgatgatcctgataaagcttacatgactgatgctgtaag |
10100608 |
T |
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| Q |
378 |
tactttgcaaataaaatattagtgattttgtgatatctaagtatt |
422 |
Q |
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| T |
10100609 |
tactttgcaaat-aaatattagtgattttgtgatatctaagtatt |
10100652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 10100218 - 10100294
Alignment:
| Q |
19 |
aagttcaacaattacatacccaatttaaatgtactttatgacatgtacttaaccttctatacatattttgtgatcat |
95 |
Q |
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| T |
10100218 |
aagttcaacaattacatacccaatttaaatgtactttatgacatgtacttaaccttctatacatattttgtgatcat |
10100294 |
T |
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