View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_low_17 (Length: 391)
Name: NF19236_low_17
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 372
Target Start/End: Original strand, 6229697 - 6230053
Alignment:
| Q |
16 |
atgagtagaagtccaataaaaaatcttcatgttgacaataagtcatcattgcataaaaagtcgcattctccgaaaaggaaggtaattgtcatctgtgttt |
115 |
Q |
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| T |
6229697 |
atgagtagaagtccaataaaaaatcttcatgttgacaataagtcatcattgcataaaaagtcgcattctccgaaaaggaaggtaattgtcatctgtgttt |
6229796 |
T |
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| Q |
116 |
tagtactagtaggtgaaaagaaattccttgtagttaatgattgtgaattgtgatatttcccactgtgcagcaacaaccaagggtaaaagaacagaaaatt |
215 |
Q |
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| T |
6229797 |
tagtactagtaggtgaaaagaaattccttgtagttaatgattgtgaattgtgatatttcccactgtgcagcaacaaccaagggtaaaagaacagaaaatt |
6229896 |
T |
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| Q |
216 |
gcagaattaagacaacctagtccacgccaaatgtcaacagaagctgactgtccaaatgtgatttcggaaaatattctgaagtgcttatcaagcattctct |
315 |
Q |
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| T |
6229897 |
gcagaattaagacaacctagtccacaccaaatgtcaacagaagctgactgtccaaatgtgatttcggaaaatattctgaagtgcttatcaagcattctct |
6229996 |
T |
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| Q |
316 |
tgagaatgagttcagtgaagtatccaggttctgcaggcgacatatcttcgcccttat |
372 |
Q |
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| T |
6229997 |
tgagaatgagttcagtgaagtatccaggttctgcaggcgacatatcttcgcccttat |
6230053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 46640488 - 46640447
Alignment:
| Q |
285 |
aatattctgaagtgcttatcaagcattctcttgagaatgagt |
326 |
Q |
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| T |
46640488 |
aatattctgaagtgcttaactagcattctcttgagaatgagt |
46640447 |
T |
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