View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_low_2 (Length: 595)
Name: NF19236_low_2
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 37 - 587
Target Start/End: Original strand, 37776014 - 37776582
Alignment:
| Q |
37 |
gacagagaaacggattcatggagaatgtttatggatagcaaactacttgatttgcatacctcacccgtggctgcacttgttccccttaaaggaaa----- |
131 |
Q |
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| T |
37776014 |
gacagagaaacggattcatggagaatgtttatggatagcaaactacttgatttgcatacctcacccgtggctgcacttgttccccttaaaggaaagttat |
37776113 |
T |
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| Q |
132 |
---------------atatgagcatcagtctagtggatgtttcaagtcctaataaagaagtacaaagcaacaattacattcgggaaaatattgctggagg |
216 |
Q |
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| T |
37776114 |
gcattatatacgaaaatatgagcatcagtctagtagatgtttcaagtcctaataaagaagtacaaagcaacaattacattcgggaaaatattgctggagg |
37776213 |
T |
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| Q |
217 |
aaggtcgaaggattgcattgaatgctgtcaggtgcttgaagcctgagctacagaatttatctgctaatatttgtcaacatttagggaaattgacgttttc |
316 |
Q |
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| T |
37776214 |
aaggtcgaaggattgcatt--atgctgtcaggtgcttgaagcctgagctacataatttatctgctaatatttgtcaacatttatggaaattgacgttttc |
37776311 |
T |
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| Q |
317 |
tttggtaaatcagacaataggtgttaatctatttttcttgtgagggacatgtaggaaaattatgtttttcgtcttgtttggatgctgttaattttttatt |
416 |
Q |
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| T |
37776312 |
tttggtaaatcagacaataggtgttaatctatttttcttgtgagggacatgtaggaaaattatgtttttcgtcttgttcggatgctgttaattttttatt |
37776411 |
T |
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| Q |
417 |
gacaataaaatggagccattcattttcactctcaactatagtgcagatgttgcacatgcttatgttacaagatgtaaggtttgttacatttactttttag |
516 |
Q |
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| T |
37776412 |
gacaataaaatggagccattcattttcactctcaagtatattgcagatgttgcacatgcttatgttacaagatgtaaggtttgttacatttactttttag |
37776511 |
T |
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| Q |
517 |
cagtatatttttgtaatctcagttcatgttttctttggaaaatcagaaacaatatgtttgtccatattctt |
587 |
Q |
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| T |
37776512 |
cagtatatttttttaatctcagttcatgttttctttggaaaatcagaaacattatgtttgtccattttctt |
37776582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 37779929 - 37780116
Alignment:
| Q |
134 |
atgagcatcagtctagtggatgtttcaagtcctaataaagaagtacaaagcaacaattacattcgggaaaatattgctggaggaaggtcgaaggattgca |
233 |
Q |
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| T |
37779929 |
atgagcataagtttagtcgatgtttcaagtcctaataaacaagtagaaagctacccttacaattgggaaaatattgttggagaaggtttgaagggtaact |
37780028 |
T |
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| Q |
234 |
ttgaatgctgtcaggtgcttgaagcctgagctacagaatttatctgctaatatttgtcaacatttagggaaattgacgttttctttgg |
321 |
Q |
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| T |
37780029 |
ttgtttgctgtcaggtgttggaagcctgagctacaaaacttatctgccaatcttagtcaacttttagggaaatcgacgctttctttgg |
37780116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 329
Target Start/End: Original strand, 37783356 - 37783484
Alignment:
| Q |
201 |
aaaatattgctggaggaaggtcgaaggattgcattgaatgctgtcaggtgcttgaagcctgagctacagaatttatctgctaatatttgtcaacatttag |
300 |
Q |
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| T |
37783356 |
aaaatattgttggagaagggttgaggggttgcgttgaacgctgtcaggtgcttgaagcttaagctacaaaatttatttgttgatctcagttaacatttag |
37783455 |
T |
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| Q |
301 |
ggaaattgacgttttctttggtaaatcag |
329 |
Q |
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| T |
37783456 |
ggaaatggacgttttgtttggaaaatcag |
37783484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 37781438 - 37781488
Alignment:
| Q |
272 |
tttatctgctaatatttgtcaacatttagggaaattgacgttttctttggt |
322 |
Q |
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| T |
37781438 |
tttatctgctaatattggttaacatttaaggaaattgacgttttctttggt |
37781488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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