View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_low_20 (Length: 344)
Name: NF19236_low_20
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 48106842 - 48106510
Alignment:
| Q |
15 |
atccatagtaagcaaaccaattttatactcaaaagcaatactaaaattagaacggataataaagacgtggttgggagtggagactccactaaatttatgc |
114 |
Q |
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| T |
48106842 |
atccatagtaagcaaaccaattttatactcaaaagcaatactaaaattagaacggataataaagacgtggttgggagtggagactccactaaatttatgc |
48106743 |
T |
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| Q |
115 |
-----------------atacttcgtaccaataacatggttccaannnnnnnnnnn--gtaacaaaaaatataagaatagtaaccggtaattgatttata |
195 |
Q |
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| T |
48106742 |
gtcgacaaaatttatgcatacttcgtaccaataacatggttccaaattttttttttttgtaacaaaaaatataagaatagtaaccggtaattgatttata |
48106643 |
T |
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| Q |
196 |
acttgtaggtacgtaagagtagagtgagattccatgtaagtaatgtaaatgaaacagcattggaaggagcaacagttgtgataacacaaacaaaggcaga |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48106642 |
acttgtaggtacgtaagagtagagtgagattccatgtaagtaatgtaaatgaaacagcattggaaggagcaacagttgtgataacacaaacaaaggcaga |
48106543 |
T |
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| Q |
296 |
tttcccatttggatgtgggatgaaccatcatat |
328 |
Q |
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| T |
48106542 |
tttcccatttggatgtgggatgaaccatcatat |
48106510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 325
Target Start/End: Complemental strand, 48067090 - 48066967
Alignment:
| Q |
202 |
aggtacgtaagagtagagtgagattccatgtaagtaatgtaaatgaaacagcattggaaggagcaacagttgtgataacacaaacaaaggcagatttccc |
301 |
Q |
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||||||||||||| | |||| |||||| |||| | || |||| |||||| |||||||||||||||| ||||| || | ||||||||||||||||||||| |
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| T |
48067090 |
aggtacgtaagagcaaggtgacattccaagtaaatcatctaaacgaaacatcattggaaggagcaacggttgtcatcaaacaaacaaaggcagatttccc |
48066991 |
T |
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| Q |
302 |
atttggatgtgggatgaaccatca |
325 |
Q |
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||| ||||||||||||||| |||| |
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| T |
48066990 |
attcggatgtgggatgaactatca |
48066967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 328
Target Start/End: Complemental strand, 48063016 - 48062875
Alignment:
| Q |
187 |
tgatttataacttgtaggtacgtaagagtagagtgagattccatgtaagtaatgtaaatgaaacagcattggaaggagcaacagttgtgataacacaaac |
286 |
Q |
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||||||||||| | ||||||||||||| || ||||||||||| |||| | || ||||||||||| |||||||||||||||||||| || | |||||| |
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| T |
48063016 |
tgatttataacctacaggtacgtaagagcagggtgagattccaggtaactcatccaaatgaaacagtgttggaaggagcaacagttgttattaaacaaac |
48062917 |
T |
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| Q |
287 |
aaaggcagatttcccatttggatgtgggatgaaccatcatat |
328 |
Q |
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|| |||| |||| |||| |||||||| |||||||| |||||| |
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| T |
48062916 |
aagggcaaattttccatatggatgtgcgatgaaccgtcatat |
48062875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 323
Target Start/End: Complemental strand, 48100050 - 48099914
Alignment:
| Q |
187 |
tgatttataacttgtaggtacgtaagagtagagtgagattccatgtaagtaatgtaaatgaaacagcattggaaggagcaacagttgtgataacacaaac |
286 |
Q |
| |
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|||||||||| || ||||||| ||||| | |||||||||||||||| | || |||| |||||| | ||||||||||| || |||| || | |||||| |
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| T |
48100050 |
tgatttataaactgcaggtacgcaagagcaaggtgagattccatgtaactcatctaaacaaaacagaaatggaaggagcatcaattgtcatcaaacaaac |
48099951 |
T |
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| Q |
287 |
aaaggcagatttcccatttggatgtgggatgaaccat |
323 |
Q |
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||||||| |||||||| |||||||||||||||||||| |
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| T |
48099950 |
aaaggcaaatttcccacttggatgtgggatgaaccat |
48099914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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