View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19236_low_22 (Length: 335)

Name: NF19236_low_22
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19236_low_22
NF19236_low_22
[»] chr7 (10 HSPs)
chr7 (19-322)||(8456866-8457169)
chr7 (19-273)||(18815126-18815378)
chr7 (19-170)||(27987393-27987552)
chr7 (138-184)||(40682095-40682141)
chr7 (117-177)||(40891583-40891643)
chr7 (138-183)||(28173808-28173853)
chr7 (155-187)||(4077555-4077587)
chr7 (125-181)||(10274875-10274931)
chr7 (125-177)||(22865567-22865619)
chr7 (117-169)||(47549189-47549241)
[»] chr1 (12 HSPs)
chr1 (19-273)||(26996200-26996460)
chr1 (20-186)||(24544868-24545042)
chr1 (178-265)||(24542467-24542555)
chr1 (122-273)||(28520561-28520712)
chr1 (138-239)||(48710360-48710461)
chr1 (142-222)||(29555239-29555319)
chr1 (129-184)||(48611399-48611454)
chr1 (138-196)||(26805224-26805282)
chr1 (138-187)||(17708242-17708291)
chr1 (138-187)||(30110753-30110802)
chr1 (138-187)||(33136772-33136821)
chr1 (140-189)||(33743291-33743340)
[»] scaffold0289 (1 HSPs)
scaffold0289 (19-262)||(11302-11553)
[»] chr4 (13 HSPs)
chr4 (19-248)||(25135542-25135778)
chr4 (138-239)||(10349381-10349482)
chr4 (138-183)||(13026927-13026972)
chr4 (138-183)||(18921305-18921350)
chr4 (115-180)||(25913318-25913383)
chr4 (140-189)||(40305232-40305281)
chr4 (117-177)||(22340922-22340982)
chr4 (117-177)||(29123257-29123317)
chr4 (138-187)||(18106384-18106433)
chr4 (138-187)||(34322147-34322196)
chr4 (138-187)||(42778501-42778550)
chr4 (138-187)||(53486781-53486830)
chr4 (117-169)||(17468954-17469006)
[»] chr3 (7 HSPs)
chr3 (138-239)||(48352094-48352195)
chr3 (122-175)||(42459125-42459178)
chr3 (138-187)||(47537531-47537580)
chr3 (138-187)||(48192062-48192111)
chr3 (117-169)||(16664319-16664371)
chr3 (117-177)||(23603605-23603665)
chr3 (117-169)||(52196629-52196681)
[»] chr5 (10 HSPs)
chr5 (138-239)||(22113895-22113996)
chr5 (125-201)||(19315607-19315683)
chr5 (138-184)||(42457097-42457143)
chr5 (115-180)||(19337991-19338056)
chr5 (138-183)||(27515878-27515923)
chr5 (140-193)||(42918009-42918062)
chr5 (122-177)||(38932117-38932172)
chr5 (138-187)||(4415528-4415577)
chr5 (138-195)||(4926190-4926247)
chr5 (117-169)||(29323135-29323187)
[»] chr2 (7 HSPs)
chr2 (138-234)||(43408352-43408447)
chr2 (138-201)||(1998354-1998417)
chr2 (138-177)||(9584069-9584108)
chr2 (138-196)||(42474413-42474471)
chr2 (138-187)||(1380345-1380394)
chr2 (138-187)||(2999576-2999625)
chr2 (117-177)||(1258804-1258864)
[»] chr8 (5 HSPs)
chr8 (140-239)||(18182647-18182746)
chr8 (138-180)||(45255664-45255706)
chr8 (138-187)||(17659094-17659143)
chr8 (138-186)||(29681621-29681669)
chr8 (138-182)||(31687088-31687132)
[»] chr6 (6 HSPs)
chr6 (117-255)||(7218091-7218229)
chr6 (138-235)||(7579286-7579383)
chr6 (138-187)||(649894-649943)
chr6 (138-187)||(9199080-9199129)
chr6 (117-169)||(5391344-5391396)
chr6 (138-234)||(23660420-23660516)
[»] scaffold0225 (1 HSPs)
scaffold0225 (138-195)||(5886-5943)
[»] scaffold0041 (1 HSPs)
scaffold0041 (117-177)||(74641-74701)
[»] scaffold0134 (1 HSPs)
scaffold0134 (138-184)||(41667-41713)
[»] scaffold0003 (1 HSPs)
scaffold0003 (117-166)||(224556-224605)
[»] scaffold0094 (1 HSPs)
scaffold0094 (125-201)||(25565-25641)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 8457169 - 8456866
Alignment:
Q  19 gttaagtaagaatacgcagattgcactgtgtatttgttggaagggtaaagttttcacacac--ctatcagccatgtcaacctacaaacaagaacagacaa 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  8457169 gttaagtaagaatacgcagattgcacggtgtatttgttggaagggtaaagttttcacacacacctatcagccatgtcaacctacaaacaagaacaaacaa 8457070  T
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatctccga 216  Q
    ||  ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8457069 ccgttcactcccccaccaaaacctcctcccac--aaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatctctga 8456972  T
Q  217 caccgtagctagtttattttccgataactcaacaagtcttgcataagacgtagctaattttatggaccaaaattaggaacatagggaggtgtgatgaaca 316  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  8456971 caccgtagctagtttattttacgataactcaaaaagtcttgcataagacgtagctaatttcatggactaaaattaggaacatagggaggtgtgatgaaca 8456872  T
Q  317 caggtt 322  Q
    ||||||    
T  8456871 caggtt 8456866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 18815378 - 18815126
Alignment:
Q  19 gttaagtaagaatacgcagattgcactgtgtatttgttggaagggtaaagttttcacac--acctatcagccatgtcaacctacaaa-caagaacagaca 115  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| | |||||| |||||  |||||||||||||| |||| | |||| ||||||||||||    
T  18815378 gttaagtaagaataagcagattgcacggtgtatttgttggaaggatgaagtttccacaccaacctatcagccatgccaacttgcaaaacaagaacagaca 18815279  T
Q  116 accactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatctccg 215  Q
    | |         | | ||| |  |||| |||||| ||||||||||||||||||||||||||||||||||||  || ||||| |||||| |||||||||||    
T  18815278 aac---------cgctccacacactcc-cccacgaaaataacctcctcctccacttccacgcctcaccaccatcctcccaacctaaagcaaacatctccg 18815189  T
Q  216 acaccgtagctagtttat-----tttccgataactcaacaagtcttgcataagacgtagctaa 273  Q
    | |  ||||||||||| |     ||||||||||||||| |||||||||||||||||| |||||    
T  18815188 atattgtagctagtttttttttctttccgataactcaaaaagtcttgcataagacgttgctaa 18815126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 27987552 - 27987393
Alignment:
Q  19 gttaagtaagaatacgcagattgcactgtgtatttgttggaagggtaaagttttcacac--acctatcagccatgtcaacctacaaa-caagaacagaca 115  Q
    |||||||||||||||| ||||||||   |||||||||||||| ||| |||||| |||||  |||||||||||||| |||||| |||| |||||||| |||    
T  27987552 gttaagtaagaatacgtagattgcaagatgtatttgttggaatggtgaagtttccacacccacctatcagccatgccaacctgcaaaacaagaacataca 27987453  T
Q  116 a-----ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccact 170  Q
          |||| |||||||||||||||||||| |||||||||||||||||| |||||||||    
T  27987452 gtctctccacacactcccccaccaaaacctcatcccacgcaaataacctcatcctccact 27987393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 40682141 - 40682095
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcacca 184  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  40682141 cctcctcccatgcaaacaacctcctcctccacttccacgcctcacca 40682095  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 40891643 - 40891583
Alignment:
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgc 177  Q
    |||| ||||||||||||||  | ||||||||||||||||| |||| ||||||| |||||||    
T  40891643 ccacacactcccccaccaactcttcctcccacgcaaataatctccgcctccacctccacgc 40891583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 28173853 - 28173808
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcacc 183  Q
    |||||||||||||  | || ||||||||||||||||||||||||||    
T  28173853 cctcctcccacgcccacaatctcctcctccacttccacgcctcacc 28173808  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 4077555 - 4077587
Alignment:
Q  155 aacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||||||||||||||||||| ||||||    
T  4077555 aacctcctcctccacttccacgcctccccaccc 4077587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 10274931 - 10274875
Alignment:
Q  125 tcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgcctca 181  Q
    ||||||||||   |||||||||||||||| ||||| | ||||||||||||| |||||    
T  10274931 tcccccaccacctcctcctcccacgcaaacaaccttcgcctccacttccacacctca 10274875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 22865619 - 22865567
Alignment:
Q  125 tcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgc 177  Q
    |||||||||||| | ||||||||||||||||| || | |||||||| ||||||    
T  22865619 tcccccaccaaaccttcctcccacgcaaataatctacgcctccactgccacgc 22865567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 47549189 - 47549241
Alignment:
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccac 169  Q
    |||| ||||||||||||||| | ||||||||||||||||| || | |||||||    
T  47549189 ccacacactcccccaccaaaccttcctcccacgcaaataatctacgcctccac 47549241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 26996200 - 26996460
Alignment:
Q  19 gttaagtaagaatacgcagattgcactgtgtatttgttggaagggtaaagttttcacac--acctatcagccatgtcaacctacaaa-caagaacagaca 115  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||  ||||| |||||  ||||||||||||||||||||| |||| ||||||||||||    
T  26996200 gttaagtaagaataagcagattgcacggtgtatttgttggaagggtgtagtttccacacccacctatcagccatgtcaacctgcaaaacaagaacagaca 26996299  T
Q  116 accactc-----actcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacat 210  Q
    ||| |||     ||||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| ||||||    
T  26996300 accgctccacacactcctccaccaaagcctcctcccacgcaaataacctccgcctccacttccacacctcaccacccactccccaatctaaagcaaacat 26996399  T
Q  211 ctccgacaccgtagctagtttattttccgataactcaacaagtcttgcataagacgtagctaa 273  Q
    |||||||||||||||||||||||||| ||||||||||  ||||||| |||||||||| |||||    
T  26996400 ctccgacaccgtagctagtttatttttcgataactca--aagtcttacataagacgttgctaa 26996460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 24545042 - 24544868
Alignment:
Q  20 ttaagtaagaatacgcagattgcactgtgtatttgttggaagggtaaagttttcacac--acctatcagccatgtcaacctacaaa-caagaacagacaa 116  Q
    ||||||||||||||||||||| |||| |||||||||||||||| | |||||| |||||  ||||||||||| || |||||| |||| ||| |||||||||    
T  24545042 ttaagtaagaatacgcagattacactatgtatttgttggaaggatgaagtttccacacccacctatcagccgtgccaacctgcaaaacaacaacagacaa 24544943  T
Q  117 cc-----actcactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgcctcaccacc 186  Q
    ||     || ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  24544942 ccgttccacgcactcccccaccaaaacctccccccacacaaataacctcctcctccacttccacgcctcaccacc 24544868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 24542555 - 24542467
Alignment:
Q  178 ctcaccacccacc-ccccaatctaaagtaaacatctccgacaccgtagctagtttattttccgataactcaacaagtcttgcataagac 265  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24542555 ctcaccacccacctccccaatctaaagcaaacatctccaacaccgtagctagtttattttccgataactcaaaaagtcttgcataagac 24542467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 122 - 273
Target Start/End: Complemental strand, 28520712 - 28520561
Alignment:
Q  122 cactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatctccgacaccg 221  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||| | || ||  |  ||||   ||||||||||  |||||    
T  28520712 cactcccccaccaaaccttcctcccacgcaaataatctcctcctccacttccacgcctctccatcaactccataccctaatacaaacatctccatcaccg 28520613  T
Q  222 tagctagtttattttccgataactcaacaagtcttgcataagacgtagctaa 273  Q
    |  | ||||||||||||| ||||||||  || || ||||||||||| |||||    
T  28520612 tgacaagtttattttccgttaactcaaatagcctagcataagacgttgctaa 28520561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 48710360 - 48710461
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatctccgacaccgtagctagtttattttc 237  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||| ||  |||||||  ||||   | ||||||| |||||||||||||||||||| ||    
T  48710360 cctcctcccacgcaaataacctcctacgccacttccacgcttcacctccagccccccaccctaactcacacatctctgacaccgtagctagtttattgtc 48710459  T
Q  238 cg 239  Q
    ||    
T  48710460 cg 48710461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 29555239 - 29555319
Alignment:
Q  142 ctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatctccgacaccgt 222  Q
    ||||||||||||||||||||| | ||||||||| ||||| |||  |||  ||||  | |||||||||||||||| ||||||    
T  29555239 ctcccacgcaaataacctcctacaccacttccaagcctcgccattcacatcccaccccaaagtaaacatctccgccaccgt 29555319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 48611399 - 48611454
Alignment:
Q  129 ccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgcctcacca 184  Q
    |||||| | ||||||||||||| || ||||||| ||||||| ||||||||||||||    
T  48611399 ccaccagatcctcctcccacgcgaacaacctccgcctccacgtccacgcctcacca 48611454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 26805224 - 26805282
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaa 196  Q
    |||||||||||||  | || |||||||||||| |||||||||||||||| ||| |||||    
T  26805224 cctcctcccacgcccacaatctcctcctccacctccacgcctcaccacctacctcccaa 26805282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 17708242 - 17708291
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||    
T  17708242 cctcctcccaagcccacaacctcctcctccacttccacgcctccccaccc 17708291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 30110802 - 30110753
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||    
T  30110802 cctcctcccaagcccacaacctcctcctccacttccacgcctccccaccc 30110753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 33136772 - 33136821
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||||| ||| | ||||| |||||||||||| ||||||||||||    
T  33136772 cctcctcccacggaaacagcctccccctccacttccaagcctcaccaccc 33136821  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 33743340 - 33743291
Alignment:
Q  140 tcctcccacgcaaataacctcctcctccacttccacgcctcaccacccac 189  Q
    ||||||||| | ||||| |||||| ||||||| |||||||||||||||||    
T  33743340 tcctcccacaccaataatctcctcatccactttcacgcctcaccacccac 33743291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 11302 - 11553
Alignment:
Q  19 gttaagtaagaatacgcagattgcactgtgtatttgttggaagggtaaagttttcacac-acctatcagccatgtcaacctacaaac--aagaacagaca 115  Q
    |||||||||||||| ||||||||||| |||||||| || |||||||  ||||| ||||| | | |||||||||| |||||| ||||   |||| ||||||    
T  11302 gttaagtaagaataagcagattgcacagtgtatttattcgaagggtggagtttccacaccatccatcagccatgccaacctgcaaaacaaagaccagaca 11401  T
Q  116 accactc-----actcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacat 210  Q
    ||| |||     ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |||| |||||| || |||    
T  11402 acccctccacacactcccccatcaaaacctcctcccacacaaataacctcctcctccacttccacgcctcactaccctccctccaacctaaagcaagcat 11501  T
Q  211 ctccgacaccgtagctagtttattttccgataactcaacaagtcttgcataa 262  Q
    |||||||||||||||||| ||||||| ||||||||||| |||||||||||||    
T  11502 ctccgacaccgtagctagcttatttttcgataactcaaaaagtcttgcataa 11553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 25135542 - 25135778
Alignment:
Q  19 gttaagtaagaatacgcagattgcactgtgtatttgttggaagggtaaagttttc-acacacctatcagccatgtcaacctaca-aacaagaacagacaa 116  Q
    ||||| |||||||| ||||||||||| |||||||||| |||||| | ||| || | || ||||||||||||||| |||||| || |||||||||||||||    
T  25135542 gttaaataagaataagcagattgcacggtgtatttgtgggaaggatgaagcttcccacccacctatcagccatgccaacctgcataacaagaacagacaa 25135641  T
Q  117 ccactc-----actcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatc 211  Q
    || |||     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||||||  ||||   |||||||    
T  25135642 ccgctccacacactcccccaccaaaacctcatcccacgcaaataacctcctcctccacttccacgcctctccaccagccccccaccctaacacaaacatc 25135741  T
Q  212 tccgacaccgtagctagtttattttccgataactcaa 248  Q
    |||||||||||  ||||||||||||||||||||||||    
T  25135742 tccgacaccgtgactagtttattttccgataactcaa 25135778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 10349482 - 10349381
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatctccgacaccgtagctagtttattttc 237  Q
    ||||||||||||||||||||||||| |  ||||||||||| ||||| || ||||||||  ||||   ||||||||| |||||||||||||||||||| ||    
T  10349482 cctcctcccacgcaaataacctcctacgacacttccacgcttcacctccaaccccccaccctaactcaaacatctctgacaccgtagctagtttattgtc 10349383  T
Q  238 cg 239  Q
    ||    
T  10349382 cg 10349381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 13026927 - 13026972
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcacc 183  Q
    |||||||||| |||| ||||||||||| ||||||||||||||||||    
T  13026927 cctcctcccatgcaagtaacctcctccgccacttccacgcctcacc 13026972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 18921350 - 18921305
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcacc 183  Q
    |||||||||||||||| ||||||||||||||| ||||||| |||||    
T  18921350 cctcctcccacgcaaacaacctcctcctccacctccacgcatcacc 18921305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 25913383 - 25913318
Alignment:
Q  115 aaccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgcctc 180  Q
    |||||| || ||||||| |||  |||||||||||||||||||||||||   |||||||||||||||    
T  25913383 aaccacgcattcccccaacaactcctcctcccacgcaaataacctcctatgccacttccacgcctc 25913318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 40305232 - 40305281
Alignment:
Q  140 tcctcccacgcaaataacctcctcctccacttccacgcctcaccacccac 189  Q
    ||||||||||| ||||  ||||||||| ||||||||||||||||||||||    
T  40305232 tcctcccacgccaatagtctcctcctcaacttccacgcctcaccacccac 40305281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 22340922 - 22340982
Alignment:
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgc 177  Q
    |||| ||||||||||||||  |||||||||| |||||||| |||| ||||||| |||||||    
T  22340922 ccacacactcccccaccaattcctcctcccaagcaaataatctccgcctccacctccacgc 22340982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 29123317 - 29123257
Alignment:
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgc 177  Q
    |||| ||||||||||||||| |||||||||| |||||||| || | ||||||| |||||||    
T  29123317 ccacacactcccccaccaaatcctcctcccaagcaaataatcttcgcctccacctccacgc 29123257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 18106433 - 18106384
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||    
T  18106433 cctcctcccaggcccacaacctcctcctccacttccacgcctccccaccc 18106384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 34322196 - 34322147
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||    
T  34322196 cctcctcccaggcccacaacctcctcctccacttccacgcctccccaccc 34322147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 42778501 - 42778550
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||    
T  42778501 cctcctcccaagcccacaacctcctcctccacttccacgcctccccaccc 42778550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 53486830 - 53486781
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||    
T  53486830 cctcctcccaagcccacaacctcctcctccacttccacgcctccccaccc 53486781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 17469006 - 17468954
Alignment:
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccac 169  Q
    |||| ||||||||||||||| | ||||||||||||||||| || | |||||||    
T  17469006 ccacgcactcccccaccaaaccttcctcccacgcaaataatctacgcctccac 17468954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 48352195 - 48352094
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatctccgacaccgtagctagtttattttc 237  Q
    |||||||||| |||||||||||||||| |||||||||||||||||| || |  |||||  ||||   | |||||||||||||||||||||||||||| ||    
T  48352195 cctcctcccaagcaaataacctcctccgccacttccacgcctcacctccaaaaccccatcctaactcacacatctccgacaccgtagctagtttattgtc 48352096  T
Q  238 cg 239  Q
    ||    
T  48352095 cg 48352094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 42459178 - 42459125
Alignment:
Q  122 cactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccac 175  Q
    ||||||||||||||  | ||||||||||||||||| |||||||||||| |||||    
T  42459178 cactcccccaccaactcttcctcccacgcaaataatctcctcctccacctccac 42459125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 47537531 - 47537580
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||    
T  47537531 cctcctcccaagcccacaacctcctcctccacttccacgcctccccaccc 47537580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 48192062 - 48192111
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||    
T  48192062 cctcctcccaggcccacaacctcctcctccacttccacgcctccccaccc 48192111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 16664319 - 16664371
Alignment:
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccac 169  Q
    |||| ||||||||||||||| | ||||||||||||||||| || | |||||||    
T  16664319 ccacacactcccccaccaaaccttcctcccacgcaaataatctacgcctccac 16664371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 23603605 - 23603665
Alignment:
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgc 177  Q
    |||| ||||||||||| ||  |||||||||| |||||||| |||| ||||||| |||||||    
T  23603605 ccacacactcccccactaattcctcctcccaagcaaataatctccgcctccacctccacgc 23603665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 52196629 - 52196681
Alignment:
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccac 169  Q
    |||| ||||||||||||||| | ||||||||||||||||| || | |||||||    
T  52196629 ccacacactcccccaccaaaccttcctcccacgcaaataatcttcgcctccac 52196681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 22113996 - 22113895
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatctccgacaccgtagctagtttattttc 237  Q
    ||||||||||| ||||||||||||| | |||||||||||| ||||| || ||||||||  ||||   ||||||||| ||||||||||||| |||||| ||    
T  22113996 cctcctcccacacaaataacctcctacgccacttccacgcttcacctccaaccccccaccctaactcaaacatctctgacaccgtagctaatttattgtc 22113897  T
Q  238 cg 239  Q
    ||    
T  22113896 cg 22113895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 19315607 - 19315683
Alignment:
Q  125 tcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaa 201  Q
    |||||||||||  |||||||||||||||| ||||||| ||||||| |||||||||||||  || |||||||| ||||    
T  19315607 tcccccaccaactcctcctcccacgcaaacaacctccgcctccacctccacgcctcaccctcctccccccaacctaa 19315683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 42457143 - 42457097
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcacca 184  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  42457143 cctcctcccacgcaaacaacctccgcctccacttccacgcctcacca 42457097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 19337991 - 19338056
Alignment:
Q  115 aaccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgcctc 180  Q
    |||||| |||||||||| |||  ||| ||||||||||||||| ||||| | |||||||||||||||    
T  19337991 aaccacacactcccccaacaactccttctcccacgcaaataatctcctacgccacttccacgcctc 19338056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 27515878 - 27515923
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcacc 183  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||    
T  27515878 cctcctcccacgcaaataacctcctacgccacttccacgcttcacc 27515923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 42918062 - 42918009
Alignment:
Q  140 tcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccc 193  Q
    |||||||| |||||||||||||||| ||| |||||||||||||| || ||||||    
T  42918062 tcctcccaagcaaataacctcctccgccatttccacgcctcacctccaaccccc 42918009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 38932117 - 38932172
Alignment:
Q  122 cactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgc 177  Q
    |||||||||| |||| | ||||||||||||||||| |||| ||||||| |||||||    
T  38932117 cactcccccatcaaaccttcctcccacgcaaataatctccgcctccacctccacgc 38932172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 4415577 - 4415528
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||    
T  4415577 cctcctcccaggcccacaacctcctcctccacttccacgcctccccaccc 4415528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 4926247 - 4926190
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccacccccca 195  Q
    |||||||||| ||||| ||||||| |||||||||||||||| | |||| ||| |||||    
T  4926247 cctcctcccatgcaaacaacctccgcctccacttccacgccactccactcacacccca 4926190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 29323135 - 29323187
Alignment:
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccac 169  Q
    |||| ||||||||||||||| | ||||||||||||||||| || | |||||||    
T  29323135 ccacacactcccccaccaaaccttcctcccacgcaaataatctacgcctccac 29323187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 43408447 - 43408352
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatctccgacaccgtagctagtttatt 234  Q
    ||||||||||||||||||||||||| | ||||| |||||| |||||  | ||||||||  ||||   ||||||||| ||||||||||||||||||||    
T  43408447 cctcctcccacgcaaataacctcctacgccact-ccacgcttcaccttcaaccccccaccctaactcaaacatctctgacaccgtagctagtttatt 43408352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 1998354 - 1998417
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaa 201  Q
    |||||||||||||||| |||| |||||||||| ||||||| ||||| || ||||||||| ||||    
T  1998354 cctcctcccacgcaaacaaccccctcctccacctccacgcatcacccccaaccccccaacctaa 1998417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 9584069 - 9584108
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgc 177  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  9584069 cctcctcccacgcaaacaacctccgcctccacttccacgc 9584108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 42474413 - 42474471
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaa 196  Q
    |||||||||||||||| |  ||||| ||||||||||| ||||||||| |||| ||||||    
T  42474413 cctcctcccacgcaaaaagtctccttctccacttccatgcctcaccatccactccccaa 42474471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 1380345 - 1380394
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||    
T  1380345 cctcctcccaagcccacaacctcctcctccacttccacgcctccccaccc 1380394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 2999625 - 2999576
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||    
T  2999625 cctcctcccaggcccacaacctcctcctccacttccacgcctccccaccc 2999576  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 1258804 - 1258864
Alignment:
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgc 177  Q
    |||| ||||||||||||||  | ||||||||||| ||||| |||| |||||||| ||||||    
T  1258804 ccacacactcccccaccaatccttcctcccacgcgaataatctccgcctccactgccacgc 1258864  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 18182647 - 18182746
Alignment:
Q  140 tcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatctccgacaccgtagctagtttattttccg 239  Q
    ||||| ||||||||||||||||||| ||||||||||||||| ||| ||||| ||||   |||   ||||||||||  |||||| ||||| ||||||||||    
T  18182647 tcctctcacgcaaataacctcctccgccacttccacgcctctccatccacctcccaccttaacaaaaacatctcctccaccgtggctagcttattttccg 18182746  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 45255706 - 45255664
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctc 180  Q
    |||||||||| ||  ||||||||||||||||||||||||||||    
T  45255706 cctcctcccaagcccataacctcctcctccacttccacgcctc 45255664  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 17659094 - 17659143
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||    
T  17659094 cctcctcccaagcccacaacctcctcctccacttccacgcctccccaccc 17659143  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 29681669 - 29681621
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccacc 186  Q
    |||||| ||| ||||| |||||||||||| ||||||||||||| |||||    
T  29681669 cctccttccaagcaaacaacctcctcctctacttccacgcctccccacc 29681621  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 31687088 - 31687132
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcac 182  Q
    |||||||||||||||| ||||||| ||||||| ||||||| ||||    
T  31687088 cctcctcccacgcaaacaacctccgcctccacctccacgcgtcac 31687132  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 255
Target Start/End: Complemental strand, 7218229 - 7218091
Alignment:
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatctccga 216  Q
    |||| |||||||| |||||  | ||||||||||||||||| |||||||||||  |||||||  | ||| || |||||||  ||||   |||||||||| |    
T  7218229 ccacacactccccgaccaactcttcctcccacgcaaataatctcctcctccatctccacgctcccccatccgccccccatcctaacacaaacatctccca 7218130  T
Q  217 caccgtagctagtttattttccgataactcaacaagtct 255  Q
    |||||| ||   |||||||||||| || |||| ||||||    
T  7218129 caccgtggcctctttattttccgacaattcaaaaagtct 7218091  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 7579286 - 7579383
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatctccgacaccgtagctagtttattt 235  Q
    |||||||||| ||||||||||| |||| ||||||||||||||| || || |  |||||  ||||   | |||||| |||||||||||||||| |||||    
T  7579286 cctcctcccaagcaaataaccttctccgccacttccacgcctcgcctccaaaaccccatcctaactcacacatcttcgacaccgtagctagtatattt 7579383  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 649943 - 649894
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||    
T  649943 cctcctcccaagcccacaacctcctcctccacttccacgcctccccaccc 649894  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 9199129 - 9199080
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccaccc 187  Q
    |||||||||| ||  | |||||||||||||||||||||||||| ||||||    
T  9199129 cctcctcccaagcccacaacctcctcctccacttccacgcctccccaccc 9199080  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 5391396 - 5391344
Alignment:
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccac 169  Q
    |||| ||||||||||||||| | ||||||||||||||||| || | |||||||    
T  5391396 ccacacactcccccaccaaaccttcctcccacgcaaataatcttcgcctccac 5391344  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 23660420 - 23660516
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaaagtaaacatctccgacaccgtagctagtttatt 234  Q
    ||||| ||||| ||| ||||||||| | |||||||||||| ||||| || ||||||||  ||||   |||||||| | |||||||| | ||||||||    
T  23660420 cctccacccacacaagtaacctcctacgccacttccacgcttcacctccaaccccccaccctaactcaaacatctgcaacaccgtaaccagtttatt 23660516  T

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Target: scaffold0225 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 5943 - 5886
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccacccccca 195  Q
    ||||||||||||| |||||||| |  |||||| |||||||||||||| ||||||||||    
T  5943 cctcctcccacgcgaataacctacgtctccacctccacgcctcaccatccacccccca 5886  T

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Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 74641 - 74701
Alignment:
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgc 177  Q
    |||| ||||||||||||||  | ||||||||||||||||| |||| ||||||| |||||||    
T  74641 ccacacactcccccaccaactcttcctcccacgcaaataatctccgcctccacctccacgc 74701  T

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Target: scaffold0134 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 41713 - 41667
Alignment:
Q  138 cctcctcccacgcaaataacctcctcctccacttccacgcctcacca 184  Q
    |||||||||||||||| || ||||| ||||||||| |||||||||||    
T  41713 cctcctcccacgcaaacaatctccttctccacttcaacgcctcacca 41667  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 224605 - 224556
Alignment:
Q  117 ccactcactcccccaccaaaacctcctcccacgcaaataacctcctcctc 166  Q
    |||| ||||||||||||||  | ||||||||||||||||| |||||||||    
T  224605 ccacacactcccccaccaactcttcctcccacgcaaataatctcctcctc 224556  T

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Target: scaffold0094 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 25565 - 25641
Alignment:
Q  125 tcccccaccaaaacctcctcccacgcaaataacctcctcctccacttccacgcctcaccacccaccccccaatctaa 201  Q
    |||||||||||  |||||||||||| ||| | || || ||||||||||||| |||| ||| || |||||||| ||||    
T  25565 tcccccaccaactcctcctcccacgtaaacagcccccgcctccacttccacacctctccatcctccccccaacctaa 25641  T

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