View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19236_low_23 (Length: 333)

Name: NF19236_low_23
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19236_low_23
NF19236_low_23
[»] chr4 (3 HSPs)
chr4 (11-197)||(20297563-20297749)
chr4 (250-302)||(20297766-20297818)
chr4 (251-304)||(20303720-20303773)
[»] chr5 (27 HSPs)
chr5 (11-184)||(30434792-30434965)
chr5 (11-194)||(30059317-30059500)
chr5 (11-184)||(30748613-30748786)
chr5 (17-182)||(4380630-4380795)
chr5 (11-208)||(29871132-29871329)
chr5 (11-184)||(30243332-30243505)
chr5 (11-184)||(30339485-30339658)
chr5 (11-198)||(30399021-30399208)
chr5 (11-192)||(29852261-29852442)
chr5 (11-184)||(30482374-30482547)
chr5 (11-197)||(30678128-30678317)
chr5 (11-119)||(30714394-30714502)
chr5 (244-305)||(30059245-30059306)
chr5 (18-183)||(30205481-30205646)
chr5 (244-305)||(30339679-30339740)
chr5 (238-305)||(29871074-29871141)
chr5 (244-311)||(30482286-30482353)
chr5 (251-305)||(30243533-30243587)
chr5 (251-305)||(30678332-30678386)
chr5 (251-306)||(29852186-29852241)
chr5 (251-306)||(30398952-30399007)
chr5 (244-305)||(30748531-30748592)
chr5 (24-184)||(30203120-30203280)
chr5 (244-301)||(30434714-30434771)
chr5 (251-304)||(30205399-30205452)
chr5 (137-184)||(29709995-29710042)
chr5 (244-296)||(30203047-30203099)
[»] chr7 (2 HSPs)
chr7 (11-184)||(26706302-26706475)
chr7 (246-305)||(26706220-26706279)
[»] chr1 (2 HSPs)
chr1 (17-119)||(7582694-7582796)
chr1 (24-113)||(7098456-7098545)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 20297563 - 20297749
Alignment:
Q  11 cataggggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttcca 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||   | ||||||||||||||| | ||||||||||||    
T  20297563 catagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaagttgaaaatctccaaatgccctaaacttggaatgccatgtcttcca 20297662  T
Q  111 tctcttaaatccctcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttacaaagcttttccta 197  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||  |||||| ||||    
T  20297663 tctcttaaatccctcgatgtcgatccatgtaacaatgagttactgagatcaatctctactttccgtggtcttactcagctttcccta 20297749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 20297766 - 20297818
Alignment:
Q  250 taataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatct 302  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20297766 taataacatccttcccagatgggatgttcaaaaaccttacttctcttcaatct 20297818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 20303720 - 20303773
Alignment:
Q  251 aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctct 304  Q
    |||||||||||||| | |||||||||||| ||||||||||| ||||||| ||||    
T  20303720 aataacatccttccaaaaggggatgttcataaaccttacttgtcttcaaactct 20303773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 30434965 - 30434792
Alignment:
Q  11 cataggggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttcca 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||   | ||||||||||||||||| ||||||||||||    
T  30434965 catagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctagtttggatatctggaaatgccctaaacttggactgccatgtcttcca 30434866  T
Q  111 tctcttaaatccctcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 184  Q
    |||||||||  ||||| |||| ||  | ||||||||||||||||||||||||||||||||||||||||||||||    
T  30434865 tctcttaaagacctcggtgtcgatggacgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 30434792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 30059500 - 30059317
Alignment:
Q  11 cataggggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttcca 110  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||| |||||||||||| ||||||||||||    
T  30059500 catagagggtttattgaaagtggaaagaggggagatgtttccttgtctttctaagttggatatctctgaatgccgtaaacttggactgccatgtcttcca 30059401  T
Q  111 tctcttaaatccctcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttacaaagcttttc 194  Q
    |||||||||||||||  |||      ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  30059400 tctcttaaatccctcactgtatcggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagcttttc 30059317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 30748786 - 30748613
Alignment:
Q  11 cataggggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttcca 110  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||  ||||||||| |||||||||| ||||||||||||    
T  30748786 catagagggattattgaaagtggaaagaggggagatgtttccttgtctttctaagttggatatctgggattgccctgaacttggactgccatgtcttcca 30748687  T
Q  111 tctcttaaatccctcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 184  Q
    ||||||||||||||| || |      ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30748686 tctcttaaatccctccatttatgggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 30748613  T

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Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 4380795 - 4380630
Alignment:
Q  17 ggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttccatctctt 116  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||  ||||||||||||||||||| ||||||| ||||||||||    
T  4380795 ggggttattgaaagtggaaagaggggagttgtttccttgtctttctaacttggatatctagaattgccctaaacttggactgccatgtcatccatctctt 4380696  T
Q  117 aaatccctcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtctt 182  Q
    |||  ||||| |||  |   |||||||||||||||||||||||||||||||||||| |||||||||    
T  4380695 aaacacctcgttgttgagggatgtaacaatgagttactgaggtcaatctctacctttcgtggtctt 4380630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 29871329 - 29871132
Alignment:
Q  11 cataggggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttcca 110  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |   | ||||||||| ||||||| ||||||||||||    
T  29871329 catagagggtttattgaaagttgaaagaggggagatgtttccttgtctttctagtttggatatttggaaatgccctaaaattggactgccatgtcttcca 29871230  T
Q  111 tctcttaaatccctcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttacaaagcttttcctaggtgacggtga 208  Q
    |||||||||  ||||| || | ||||||||||||||||||||||||||||||||||||||||  ||||||||||  |||||  |||| ||||||||||    
T  29871229 tctcttaaagacctcgttgccgatccatgtaacaatgagttactgaggtcaatctctaccttttgtggtcttactcagcttgccctaagtgacggtga 29871132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 30243332 - 30243505
Alignment:
Q  11 cataggggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttcca 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||   | ||||||||||||||||| ||||||||||||    
T  30243332 catagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctagtttggatatctggaaatgccctaaacttggactgccatgtcttcca 30243431  T
Q  111 tctcttaaatccctcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 184  Q
    |||||||||  ||||  |||      ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30243432 tctcttaaagacctctttgtatgggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 30243505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 30339485 - 30339658
Alignment:
Q  11 cataggggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttcca 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||   ||||||||||| ||||||| ||||||||||||    
T  30339485 catagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttgacaatctcctattgccctaaaattggactgccatgtcttcca 30339584  T
Q  111 tctcttaaatccctcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 184  Q
    |||||||||  |||| ||||  |   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30339585 tctcttaaagacctctatgttgagggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 30339658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 30399208 - 30399021
Alignment:
Q  11 cataggggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttcca 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||   |||   | |||||||||||||||| | ||||||||||||    
T  30399208 catagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctgagttgagaatcacagcttgccctaaacttggagtgccatgtcttcca 30399109  T
Q  111 tctcttaaatccctcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttacaaagcttttcctag 198  Q
    ||||||||||||||| ||||      ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  30399108 tctcttaaatccctctatgtattgggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactgagctttccctag 30399021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 29852442 - 29852261
Alignment:
Q  11 cataggggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttcca 110  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| | ||||   |||||||| |||||||||| ||||||||||||    
T  29852442 catagaggggttattgaaagtggaaagagggaagatatttccttgtctttctaatttgaaaatctcatattgccctgaacttggactgccatgtcttcca 29852343  T
Q  111 tctcttaaatccctcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttacaaagcttt 192  Q
    ||||| |||   ||| ||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29852342 tctctgaaactgctccatgtattgggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttacaaagcttt 29852261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 30482547 - 30482374
Alignment:
Q  11 cataggggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttcca 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||   |||||| |||||||||||| |||| |||||||    
T  30482547 catagaggggttattgaaagtggaaagaggggagatgtttccttgtctttcttacttggaaatctcatattgccataaacttggactgccatctcttcca 30482448  T
Q  111 tctcttaaatccctcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 184  Q
    |||||| ||  |||| ||||  ||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30482447 tctcttgaaggcctctatgtggatggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 30482374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 30678128 - 30678317
Alignment:
Q  11 cataggggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaa---cttggactaccatgtctt 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||   |||||||||||   |||||||| |||||||||    
T  30678128 catagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaggttggatatctggaattgccctaaactgcttggactgccatgtctt 30678227  T
Q  108 ccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttacaaagcttttccta 197  Q
    ||||||||||||   |||||  |      ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  30678228 ccatctcttaaagaactcgagatatggggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagctttcccta 30678317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 30714394 - 30714502
Alignment:
Q  11 cataggggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttcca 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||   ||| ||  |||||||||||||||||| ||||||||||||    
T  30714394 catagtggggttattgaaagtggaaagaggggagatgtttccttctctttctaaattggtaatcgattgttgccctaaacttggactgccatgtcttcca 30714493  T
Q  111 tctcttaaa 119  Q
    |||||||||    
T  30714494 tctcttaaa 30714502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 30059306 - 30059245
Alignment:
Q  244 gtgaagtaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 305  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30059306 gtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 30059245  T

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Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 30205646 - 30205481
Alignment:
Q  18 gggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttccatctctta 117  Q
    ||||||||||||||||||||||| |||||||||||||||||||||  |||    ||||    |||||||||||||||||| |||||||||  ||||||||    
T  30205646 gggttattgaaagtggaaagaggtgagatgtttccttgtctttctcgtttaaccatctccttttgccctaaacttggactgccatgtcttgtatctctta 30205547  T
Q  118 aatccctcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtctta 183  Q
    ||  ||| |||||      ||||||||||||||| |||||||||||||||| |||  |||||||||    
T  30205546 aaaacctagatgtattgggatgtaacaatgagttgctgaggtcaatctctagcttttgtggtctta 30205481  T

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Target: chr5; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 30339679 - 30339740
Alignment:
Q  244 gtgaagtaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 305  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30339679 gtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 30339740  T

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Target: chr5; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 29871141 - 29871074
Alignment:
Q  238 gtgaccgtgaagtaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 305  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29871141 gtgacggtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttctatctctg 29871074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 30482353 - 30482286
Alignment:
Q  244 gtgaagtaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctggaagta 311  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  30482353 gtgaaggaataacatccttcccagaggggatgttcaaaaaccttacttgtcttcaatatctggaagta 30482286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 30243533 - 30243587
Alignment:
Q  251 aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30243533 aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 30243587  T

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Target: chr5; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 30678332 - 30678386
Alignment:
Q  251 aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30678332 aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 30678386  T

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Target: chr5; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 29852241 - 29852186
Alignment:
Q  251 aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctgg 306  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29852241 aataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctgg 29852186  T

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Target: chr5; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 30399007 - 30398952
Alignment:
Q  251 aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctgg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30399007 aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatcactgg 30398952  T

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Target: chr5; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 30748592 - 30748531
Alignment:
Q  244 gtgaagtaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 305  Q
    |||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  30748592 gtgaaggaataacatccttaccagaggagatgttcaaaaaccttacttctcttcaatctctg 30748531  T

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Target: chr5; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 30203280 - 30203120
Alignment:
Q  24 ttgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttccatctcttaaatccc 123  Q
    |||||||||||||||| |||||||||||||||||||| | | ||| |||||     || ||||||||||  |||  |||||||||||| | |||||  ||    
T  30203280 ttgaaagtggaaagagaggagatgtttccttgtctttttcaattggatatcgccttttaccctaaacttcaactgtcatgtcttccatatgttaaaaacc 30203181  T
Q  124 tcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 184  Q
    |  |||| |||  |||||||||||||||||||||||| ||||||| ||||  |||||||||    
T  30203180 tttatgtaaatgaatgtaacaatgagttactgaggtcgatctctagcttctatggtcttac 30203120  T

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Target: chr5; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 30434771 - 30434714
Alignment:
Q  244 gtgaagtaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatc 301  Q
    |||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  30434771 gtgaaggaataacatccttaccagaggagatgttcaaaaaccttacttctcttcaatc 30434714  T

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Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 30205452 - 30205399
Alignment:
Q  251 aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctct 304  Q
    ||||||||||||||| || |||||||||||||||||||||| ||||||| ||||    
T  30205452 aataacatccttcccggacgggatgttcaaaaaccttacttgtcttcaagctct 30205399  T

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Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 29709995 - 29710042
Alignment:
Q  137 atgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 184  Q
    ||||||||||||||||||||| |||||||||||||   ||||||||||    
T  29709995 atgtaacaatgagttactgagatcaatctctacctcatgtggtcttac 29710042  T

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Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 30203099 - 30203047
Alignment:
Q  244 gtgaagtaataacatccttcccagaggggatgttcaaaaaccttacttctctt 296  Q
    |||||| |||||| ||||||||| |||||||||| | ||||||||||| ||||    
T  30203099 gtgaaggaataacctccttcccaaaggggatgtttagaaaccttacttgtctt 30203047  T

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Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 26706475 - 26706302
Alignment:
Q  11 cataggggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttcca 110  Q
    ||||| ||||||||||||||||||||||||  || |||||||||||||||||  ||||   || ||  |||||||||| || ||||| ||||||||||||    
T  26706475 catagaggggttattgaaagtggaaagaggaaaggtgtttccttgtctttctcgtttgacaatatactattgccctaagctaggactgccatgtcttcca 26706376  T
Q  111 tctcttaaatccctcgatgtcaatccatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 184  Q
    ||||||||||||||| ||||      |||||||||||||||||||||||||||| ||||||| |||||||||||    
T  26706375 tctcttaaatccctcaatgtttcgggatgtaacaatgagttactgaggtcaatccctacctttcgtggtcttac 26706302  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 26706279 - 26706220
Alignment:
Q  246 gaagtaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 305  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26706279 gaaggaataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 26706220  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 7582694 - 7582796
Alignment:
Q  17 ggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttccatctctt 116  Q
    |||||| ||||||||||||| |  ||||||||||||||||||||||| |||| | ||| |  ||||||||||||||| ||| || |||||||||||| ||    
T  7582694 ggggttgttgaaagtggaaaaaaaggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtgtcttccatctgtt 7582793  T
Q  117 aaa 119  Q
    |||    
T  7582794 aaa 7582796  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 7098545 - 7098456
Alignment:
Q  24 ttgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttccatct 113  Q
    ||||||||||||||||  |||| ||||||||||||||||| |||| | ||| |  ||||||||||||||| ||| || ||||||||||||    
T  7098545 ttgaaagtggaaagagatgagacgtttccttgtctttctattttggaaatcgacaattgccctaaacttgaacttccgtgtcttccatct 7098456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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