View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_low_28 (Length: 297)
Name: NF19236_low_28
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 40635748 - 40636029
Alignment:
| Q |
1 |
tttaaacttggatgttagtgtctctgttgaaactcccgttgtaagaggagaagcaccgccaccttcctgttccaccatcgtagaagtagctatggagaag |
100 |
Q |
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| T |
40635748 |
tttaaacttggatgttagtgtctctgttgaaactcccgttgtaagaggagaagcactgccaccttcctgttccaccatcgtagaagtagctatggagaag |
40635847 |
T |
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| Q |
101 |
cttgatcaaattcggagtcgtcaaaatttaataaccagtaataaggtgattgagatggtggaagaagtaaaagatgggctcaaagacctgaaaaacattg |
200 |
Q |
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| T |
40635848 |
cttgatcaaattcggagtcgtcaaaatttaataaccagtaataaggtgattgagatggtggaagaagtaaaagatgggctcaaagacctgaaaaacattg |
40635947 |
T |
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| Q |
201 |
tgtctaaattgaagtcaacaaatcaaagagaaactgtgtggttggaagaggtgaacgaagtttgtaattactcggaaaaagt |
282 |
Q |
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| T |
40635948 |
tgtctaaattgaagtcaacaaatcaaagagaaactgtgtggttggaagaggtgaacgaagtctgtaattactcggaaaaagt |
40636029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 2 - 271
Target Start/End: Complemental strand, 40629386 - 40629114
Alignment:
| Q |
2 |
ttaaacttggatgttagtgtctctgttgaaactcccgttgtaagaggagaagcaccgccaccttcctgttccaccatc---gtagaagtagctatggaga |
98 |
Q |
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||||| |||||||||||| |||| ||||||||||| |||||| ||||||||||||| |||||||| ||| ||||| |||| |||||||||||||| |
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| T |
40629386 |
ttaaatttggatgttagtatctccgttgaaactccagttgtaggaggagaagcaccaacaccttccaattctgccatcatagtagtagtagctatggaga |
40629287 |
T |
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| Q |
99 |
agcttgatcaaattcggagtcgtcaaaatttaataaccagtaataaggtgattgagatggtggaagaagtaaaagatgggctcaaagacctgaaaaacat |
198 |
Q |
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|||||||||| |||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| | |
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| T |
40629286 |
agcttgatcacattctgagatgtcaaaatttaataaccagtaataaggtgatcaagatggtggaggaagtaaaagatgggctcaaagacctgcaaaatac |
40629187 |
T |
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| Q |
199 |
tgtgtctaaattgaagtcaacaaatcaaagagaaactgtgtggttggaagaggtgaacgaagtttgtaattac |
271 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||| |
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| T |
40629186 |
tgtgtctaaattgaagtcaacaaatgaaagagaaattgtgtggttggaacaggtgaacgaagtttgtgattac |
40629114 |
T |
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