View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19236_low_3 (Length: 577)
Name: NF19236_low_3
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_3 |
 | |
|
| [»] chr3 (8 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Complemental strand, 21704221 - 21703661
Alignment:
| Q |
18 |
atatagtgcaacatcccactcacttttgtgtttcccttttaaggaagacgccacagttacaattgctagaggcagtcctttacatttattgcagagttca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21704221 |
atatagtgcaacatcccactcacttttgtgtttcccttttaaggaagacgccacagttacaattgctagaggcagtcctttacatttattgcagagttca |
21704122 |
T |
|
| Q |
118 |
tgtggcacaccacccaatgatttagagaattcatcagtaatatctgcatgcttttggaacaaagtccaagattcattttcagataagagccccagattaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21704121 |
tgtggcacaccacccaatgatttagagaattcatcagtaatatctgcatgcttttggaacaaagtccaagattcgttttcagataagagccccagattaa |
21704022 |
T |
|
| Q |
218 |
tcattttttgacagttcattgaagtgcatacttgccgattacgagtggttacaaggattttccatgctcccttgttaacactgtctatgcgaatccctat |
317 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
21704021 |
taattttttgacagttcattgaagtgcatacttgccgattacgagtggttacaaggattttccatgctcccttattaacactatctatgcgaatccctat |
21703922 |
T |
|
| Q |
318 |
actcgtcaaattaaactttttccacaaatcgtctactatgacaagaattcg-nnnnnnnnctttcagactcaaccacaaccgttgtgctctttcgtcttc |
416 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21703921 |
actcgtcagattaaactttttccacaaatcgtctactatgacaagaattcgtttttttttctttcagactcaaccacaaacgttgtgctctttcgtcttc |
21703822 |
T |
|
| Q |
417 |
ctcttcttcactgagtttcaagtttaacaaagctgccattttttcttgaatttttccaacgtttggagtttgagacactgtgattaagataaccttatcg |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21703821 |
atcttcttcactgagtttcaagtttaacaaagctgccatttttccttgaatttttctaacgtttggagtttgagacactgtgattaagataaccttatcg |
21703722 |
T |
|
| Q |
517 |
aacatatttgattcctcagccttcttaccaacttcagttacaagagttgttttcccacatc |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21703721 |
aacatatttgattcctcagccttcttaccaacttcagttgcaagagttgttttcccacatc |
21703661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 21 - 577
Target Start/End: Original strand, 21715298 - 21715854
Alignment:
| Q |
21 |
tagtgcaacatcccactcacttttgtgtttcccttttaaggaagacgccacagttacaattgctagaggcagtcctttacatttattgcagagttcatgt |
120 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||||||| ||||||||| ||||||||| ||||| |||||||| |||||||||| ||||||||| || |
|
|
| T |
21715298 |
tagtgcaacatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctaggggcagtcccttacatttatcgcagagttctcgt |
21715397 |
T |
|
| Q |
121 |
ggcacaccacccaatgatttagagaattcatcagtaatatctgcatgcttttggaacaaagtccaagattcattttcagataagagccccagattaatca |
220 |
Q |
| |
|
||||||||| ||| ||| || || || | |||||||| | |||||||||||||||||||||||| ||||||| || |||||||||| |||| | ||| |
|
|
| T |
21715398 |
ggcacaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagataagagcgccaggtgaatat |
21715497 |
T |
|
| Q |
221 |
ttttttgacagttcattgaagtgcatacttgccgattacgagtggttacaaggattttccatgctcccttgttaacactgtctatgcgaatccctatact |
320 |
Q |
| |
|
| |||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| | |
|
|
| T |
21715498 |
tcttttgacagtccattaaagtgcatacttgctgattacgagtggttacaaggattttccatgcgcccttgttaacattgtctatgtgaatccctatatt |
21715597 |
T |
|
| Q |
321 |
cgtcaaattaaactttttccacaaatcgtctactatgacaagaattcgnnnnnnnnctttcagactcaaccacaaccgttgtgctctttcgtcttcctct |
420 |
Q |
| |
|
| |||||||||||| |||||| ||||| || | ||| ||||||||||| |||||| ||||||||||||||||||||||||| | ||||| | |
|
|
| T |
21715598 |
catcaaattaaactctttccataaatcatcaattataacaagaattcgtttattttctttcaaactcaaccacaaccgttgtgctcttccctcttcgctt |
21715697 |
T |
|
| Q |
421 |
tcttcactgagtttcaagtttaacaaagctgccattttttcttgaatttttccaacgtttggagtttgagacactgtgattaagataaccttatcgaaca |
520 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||| ||||||| | || || ||| ||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
21715698 |
tcttccttgagtttcaagtttaacatgtctgccatttttccttgaatgtctctaatattttgagtttgagacactgtgatagatattaccttatcgaaca |
21715797 |
T |
|
| Q |
521 |
tatttgattcctcagccttcttaccaacttcagttacaagagttgttttcccacatc |
577 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
21715798 |
tatttgattcctgagccttcttaccgacttcggttacaagtgttgttttcccacatc |
21715854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 21 - 282
Target Start/End: Complemental strand, 21622717 - 21622456
Alignment:
| Q |
21 |
tagtgcaacatcccactcacttttgtgtttcccttttaaggaagacgccacagttacaattgctagaggcagtcctttacatttattgcagagttcatgt |
120 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||||||| ||||||||| ||||||||| ||||| | |||||| |||||||||| ||||||||| || |
|
|
| T |
21622717 |
tagtgcaacatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagggccagtcccttacatttatcgcagagttctcgt |
21622618 |
T |
|
| Q |
121 |
ggcacaccacccaatgatttagagaattcatcagtaatatctgcatgcttttggaacaaagtccaagattcattttcagataagagccccagattaatca |
220 |
Q |
| |
|
|||| |||| ||| ||| || || || | |||||||| | |||||||||||||||||||||||| ||||||| || |||||| ||| | |||| ||| |
|
|
| T |
21622617 |
ggcaaaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagataaaagctctagatgaatat |
21622518 |
T |
|
| Q |
221 |
ttttttgacagttcattgaagtgcatacttgccgattacgagtggttacaaggattttccat |
282 |
Q |
| |
|
| |||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
21622517 |
tcttttgacagtccattgaagtgcatacttgctgattacgagtggttacaaggatattccat |
21622456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 21 - 282
Target Start/End: Complemental strand, 21644431 - 21644170
Alignment:
| Q |
21 |
tagtgcaacatcccactcacttttgtgtttcccttttaaggaagacgccacagttacaattgctagaggcagtcctttacatttattgcagagttcatgt |
120 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||||||| ||||||||| ||||||||| ||||| | |||||| |||||||||| ||||||||| || |
|
|
| T |
21644431 |
tagtgcaacatcccactcacttttatgctttccttttaagcaagacgccatagttacaatagctagggccagtcccttacatttatcgcagagttctcgt |
21644332 |
T |
|
| Q |
121 |
ggcacaccacccaatgatttagagaattcatcagtaatatctgcatgcttttggaacaaagtccaagattcattttcagataagagccccagattaatca |
220 |
Q |
| |
|
|||| |||| ||| ||| || || || | |||||||| | |||||||||||||||||||||||| ||||||| || |||||| ||| | |||| ||| |
|
|
| T |
21644331 |
ggcaaaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagataaaagctctagatgaatat |
21644232 |
T |
|
| Q |
221 |
ttttttgacagttcattgaagtgcatacttgccgattacgagtggttacaaggattttccat |
282 |
Q |
| |
|
| |||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
21644231 |
tcttttgacagtccattgaagtgcatacttgctgattacgagtggttacaaggatattccat |
21644170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 91 - 569
Target Start/End: Complemental strand, 21115595 - 21115117
Alignment:
| Q |
91 |
agtcctttacatttattgcagagttcatgtggcacaccacccaatgatttagagaattcatcagtaatatctgcatgcttttggaacaaagtccaagatt |
190 |
Q |
| |
|
||||| ||||| | |||||||| ||| ||||||||||| ||||| | || ||| |||| ||| ||| |||| ||||||||| || |||||||||| |
|
|
| T |
21115595 |
agtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaacttttggaataatgtccaagatt |
21115496 |
T |
|
| Q |
191 |
cattttcagataagagccccagattaatcattttttgacagttcattgaagtgcatacttgccgattacgagtggttacaaggattttccatgctccctt |
290 |
Q |
| |
|
||| |||||| |||||||||| || |||| | |||||||||| |||||| || || || ||| |||||||||||||| |||| ||||||| || |
|
|
| T |
21115495 |
catcttcagacaagagccccaaatgaatcttcttttgacagtccattgatgtacagacatgctcattacgagtggttatcaggaccttccatgtgtgctc |
21115396 |
T |
|
| Q |
291 |
gttaacactgtctatgcgaatccctatactcgtcaaattaaactttttccacaaatcgtctactatgacaagaattcgnnnnnnnnctttcagactcaac |
390 |
Q |
| |
|
||||||| |||||| | ||||||||||| | |||||| ||||| | |||| | |||||| ||||| | ||||||||| ||| | || |||| |
|
|
| T |
21115395 |
gttaacattgtctacgagaatccctatatttatcaaatgaaactctctccatagatcgtccactattataagaattcgcttcttttgttttaaacacaac |
21115296 |
T |
|
| Q |
391 |
cacaaccgttgtgctctttcgtcttcctcttcttcactgagtttcaagtttaacaaagctgccattttttcttgaatttttccaacgtttggagtttgag |
490 |
Q |
| |
|
|| || |||||||||||| | ||||| |||||| | |||||||||||||| | |||| | |||| | ||||| || || ||||||||||||| |
|
|
| T |
21115295 |
cataaacgttgtgctcttccctcttcactttcttcctccaatttcaagtttaacatatctgcaagttttccctgaatgcctctaatatttggagtttgag |
21115196 |
T |
|
| Q |
491 |
acactgtgattaagataaccttatcgaacatatttgattcctcagccttcttaccaacttcagttacaagagttgtttt |
569 |
Q |
| |
|
|| |||||| | ||||||||||| ||||||| | |||||||||||||||| |||||||| | | |||| |||||||| |
|
|
| T |
21115195 |
cgacagtgattgatataaccttatcaaacatatctaattcctcagccttcttgccaacttctgctgcaagggttgtttt |
21115117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 337 - 546
Target Start/End: Complemental strand, 21644175 - 21643966
Alignment:
| Q |
337 |
ttccacaaatcgtctactatgacaagaattcgnnnnnnnnctttcagactcaaccacaaccgttgtgctctttcgtcttcctcttcttcactgagtttca |
436 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||| || ||| ||||||||||||||||||||||||| | ||||| ||||||| ||||||||| |
|
|
| T |
21644175 |
ttccataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttcattgagtttca |
21644076 |
T |
|
| Q |
437 |
agtttaacaaagctgccattttttcttgaatttttccaacgtttggagtttgagacactgtgattaagataaccttatcgaacatatttgattcctcagc |
536 |
Q |
| |
|
||||||||| ||||||||||| | ||||| | || || ||| ||||||||||| ||||||| | || ||||| ||||||||||||||||||| || |
|
|
| T |
21644075 |
agtttaacatgtctgccatttttccatgaatgtctctaatattttgagtttgagacgctgtgatagatattaccttgtcgaacatatttgattcctaggc |
21643976 |
T |
|
| Q |
537 |
cttcttacca |
546 |
Q |
| |
|
||||| |||| |
|
|
| T |
21643975 |
cttctcacca |
21643966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 337 - 546
Target Start/End: Complemental strand, 21622461 - 21622252
Alignment:
| Q |
337 |
ttccacaaatcgtctactatgacaagaattcgnnnnnnnnctttcagactcaaccacaaccgttgtgctctttcgtcttcctcttcttcactgagtttca |
436 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||| || ||| ||||||||| ||||||||||||||| | ||||| ||||||| ||||||||| |
|
|
| T |
21622461 |
ttccataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccataaccgttgtgctcttccctcttcgctttcttcattgagtttca |
21622362 |
T |
|
| Q |
437 |
agtttaacaaagctgccattttttcttgaatttttccaacgtttggagtttgagacactgtgattaagataaccttatcgaacatatttgattcctcagc |
536 |
Q |
| |
|
||||||||| || |||||||| | ||||| | || || ||| ||||||||||| ||||||| | || ||||| ||||||||||||||||||| || |
|
|
| T |
21622361 |
agtttaacatgtctaccatttttccatgaatatctctaatattttgagtttgagacgctgtgatagatattaccttgtcgaacatatttgattcctaggc |
21622262 |
T |
|
| Q |
537 |
cttcttacca |
546 |
Q |
| |
|
||||| |||| |
|
|
| T |
21622261 |
cttctcacca |
21622252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 577
Target Start/End: Complemental strand, 21123061 - 21122536
Alignment:
| Q |
52 |
ccttttaaggaagacgccacagttacaattgctagaggcagtcctttacatttattgcagagttcatgtggcacaccacccaatgatttagagaattcat |
151 |
Q |
| |
|
|||||||||||||| | || |||| ||||||| || ||||| || |||| || ||||| ||| ||||| |||||| | ||||| ||||||||| | |
|
|
| T |
21123061 |
ccttttaaggaagaagacatagttttgattgctaagggaagtcccttgcattcatagcagatttcttgtggtacaccatctaatgacacagagaattcgt |
21122962 |
T |
|
| Q |
152 |
cagtaatatctgcatgcttttggaacaaagtccaagattcattttcagataagagccccagattaatcattttttgacagttcattgaagtgcatacttg |
251 |
Q |
| |
|
|| ||| ||||| |||||||||| || ||||| ||||||| || || |||||||||| || |||||| || ||||| |||||| || | || || | |
|
|
| T |
21122961 |
catcaattactgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcatcttgtgacaattcattaaaatacaaacatt |
21122862 |
T |
|
| Q |
252 |
ccgattacgagtggttacaaggattttccatgctcccttgttaacactgtctatgcgaatccctatactcgtcaaattaaactttttccacaaatcgtct |
351 |
Q |
| |
|
| | |||| |||||||||||||||||| |||| || | ||| || ||| || |||||||||| || | |||||| ||||| | |||| | || ||| |
|
|
| T |
21122861 |
ctcaatacgtgtggttacaaggattttcaatgcacctctattatcattgtataagcgaatccctgtatccttcaaatgaaactctctccatagattgtca |
21122762 |
T |
|
| Q |
352 |
actatgacaagaattcgnnnnnnnnctttcagactcaaccacaaccgttgtgctctttcgtcttcctcttcttcactgagtttcaagtttaacaaagctg |
451 |
Q |
| |
|
||||| | |||| ||| |||| | || |||||| | |||||||||||| | ||||| |||||| | | |||||||||||||| | ||| |
|
|
| T |
21122761 |
actattataagagttctcttcatttcttttaaacgcaaccatagacgttgtgctcttccatcttcactttcttcccccaatttcaagtttaacatatctg |
21122662 |
T |
|
| Q |
452 |
ccattttttcttgaatttttccaacgtttggagtttgagacactgtgattaagataaccttatcgaacatatttgattcctcagccttcttaccaacttc |
551 |
Q |
| |
|
| |||| | ||||||| | | || |||||||||| | ||| |||||| | ||||||||||| ||||||| |||||||||||||||| |||||||| |
|
|
| T |
21122661 |
caatttgtccttgaatgctcctaatgtttggagttcttgtcacggtgattgatataaccttatcaaacatatccaattcctcagccttcttgccaacttc |
21122562 |
T |
|
| Q |
552 |
agttacaagagttgttttcccacatc |
577 |
Q |
| |
|
|||||||| |||||||| ||||||| |
|
|
| T |
21122561 |
cgttacaagggttgtttttccacatc |
21122536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 78 - 573
Target Start/End: Original strand, 23010257 - 23010752
Alignment:
| Q |
78 |
aattgctagaggcagtcctttacatttattgcagagttcatgtggcacaccacccaatgatttagagaattcatcagtaatatctgcatgcttttggaac |
177 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||| | || |||||||||||| | ||||| || | ||| | ||| ||||| |||||| ||| ||||| |
|
|
| T |
23010257 |
aattgctataggtagtcctttacattccatgcatactttttgtggcacaccatctaatgacttggggaaattttcatcaatatgtgcatgttttcggaac |
23010356 |
T |
|
| Q |
178 |
aaagtccaagattcattttcagataagagccccagattaatcattttttgacagttcattgaagtgcatacttgccgattacgagtggttacaaggattt |
277 |
Q |
| |
|
|||| |||||| |||| |||| |||||| || |||| |||| | |||||||||| ||| | ||||| || |||||||||||||| ||||||| | |
|
|
| T |
23010357 |
aaagaccaagactcatcttcatctaagagtcctagatgaatcttcttttgacagtgcatcagatcacatacatgttgattacgagtggttgcaaggatct |
23010456 |
T |
|
| Q |
278 |
tccatgctcccttgttaacactgtctatgcgaatccctatactcg-tcaaattaaactttttccacaaatcgtctactatgacaagaattcgnnnnnnnn |
376 |
Q |
| |
|
||||||| ||||||||| || |||||| ||||||||||| | ||| |||||| ||||| | |||| ||||| |||||||| || ||||| || |
|
|
| T |
23010457 |
tccatgcacccttgttatcattgtctaagcgaatccctaca-tcgttcaaatcaaactctctccataaatcatctactattacgagaatccgcttctttt |
23010555 |
T |
|
| Q |
377 |
ctttcagactcaaccacaaccgttgtgctctttcgtcttcctcttcttcactgagtttcaagtttaacaaagctgccattttttcttgaatttttccaac |
476 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| | || || |||||| | ||||| ||| || | | | || |||||| ||||||| | || || |
|
|
| T |
23010556 |
ctttcaaactcaaccacaaacgttgtgctcttccctcatcactttcttcctccaatttcatgttcaaaacatcagctatttttccttgaatatctctaat |
23010655 |
T |
|
| Q |
477 |
gtttggagtttgagacactgtgattaagataaccttatcgaacatatttgattcctcagccttcttaccaacttcagttacaagagttgttttccca |
573 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||| ||| || || | ||||||| | ||| ||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
23010656 |
attgggagtttgagacactgtaattaatatagtcttgtcaaaaacatttgatgcttcaaccttcttaccaacttcagtaacaagagctgttttccca |
23010752 |
T |
|
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