View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_low_30 (Length: 285)
Name: NF19236_low_30
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 26257981 - 26257868
Alignment:
| Q |
22 |
tcaacaacacataaaccaatgtttgttaacaactcctcatcaaggtcaagctcaagttcttggagttcatgatgacaacaacaatgcaagagcatcactt |
121 |
Q |
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| T |
26257981 |
tcaacaacacataaaccaatgtttgttaacaactcctcatcaaggtcaagctcaagcttttggagttcatgatgacaacaacaatgcaagagcatcactt |
26257882 |
T |
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| Q |
122 |
tcatcatcattacc |
135 |
Q |
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|||||||||||||| |
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| T |
26257881 |
tcatcatcattacc |
26257868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 26257795 - 26257734
Alignment:
| Q |
205 |
acctacaacagttctaacaaccgacacttcgaattttagagccatggttcaagaattcaccg |
266 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26257795 |
acctacgacagttctaacaaccgacacttcgaattttagagccatggttcaagaattcaccg |
26257734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 37941923 - 37941864
Alignment:
| Q |
205 |
acctacaacagttctaacaaccgacacttcgaattttagagccatggttcaagaattcac |
264 |
Q |
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||||||||| ||||||||||| |||||| | ||||| ||||||||||||||| ||||||| |
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| T |
37941923 |
acctacaactgttctaacaacagacactacaaatttcagagccatggttcaaaaattcac |
37941864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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