View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19236_low_34 (Length: 267)

Name: NF19236_low_34
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19236_low_34
NF19236_low_34
[»] chr7 (4 HSPs)
chr7 (35-243)||(3928580-3928788)
chr7 (38-227)||(3929948-3930137)
chr7 (46-216)||(21317534-21317704)
chr7 (1-43)||(3928818-3928860)
[»] scaffold0197 (1 HSPs)
scaffold0197 (46-216)||(30971-31141)
[»] chr8 (8 HSPs)
chr8 (38-244)||(43479644-43479850)
chr8 (46-244)||(38799455-38799653)
chr8 (46-244)||(38821864-38822062)
chr8 (169-244)||(38807079-38807154)
chr8 (46-216)||(41943904-41944074)
chr8 (130-207)||(26592212-26592289)
chr8 (121-207)||(25865735-25865821)
chr8 (121-207)||(44343990-44344076)
[»] chr5 (7 HSPs)
chr5 (46-243)||(12546970-12547167)
chr5 (46-243)||(12531452-12531649)
chr5 (99-203)||(9866668-9866772)
chr5 (123-209)||(9870018-9870104)
chr5 (97-243)||(9894654-9894799)
chr5 (70-188)||(38735501-38735619)
chr5 (163-200)||(12538675-12538712)
[»] chr2 (3 HSPs)
chr2 (38-215)||(13576300-13576477)
chr2 (136-215)||(34562651-34562730)
chr2 (136-215)||(34571445-34571524)
[»] chr4 (2 HSPs)
chr4 (46-242)||(24860506-24860702)
chr4 (70-182)||(53290720-53290832)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 3928788 - 3928580
Alignment:
Q  35 tcaaaagattggttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatct 134  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | |    
T  3928788 tcaaaagattggttcatgaaatcgctcaggatttcaaaactgatctccgattccagatcagcgctgtttctgctcttcaagaaatcgctgaagcgtgtat 3928689  T
Q  135 tgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgag 234  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3928688 tgttggtttgtttgaagatatgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgag 3928589  T
Q  235 agagcttag 243  Q
    |||||||||    
T  3928588 agagcttag 3928580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 38 - 227
Target Start/End: Complemental strand, 3930137 - 3929948
Alignment:
Q  38 aaagattggttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgt 137  Q
    |||||||||||| |||||||||||| |||||||||||||||||  |||| ||||  || |||||||||||| ||||||||   |||||||||||||||||    
T  3930137 aaagattggttcgtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtatcttgt 3930038  T
Q  138 tggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcag 227  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||||||| | ||||||||    
T  3930037 tggtttgtttgaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattcaacttgcaagaagaatcag 3929948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 21317534 - 21317704
Alignment:
Q  46 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 145  Q
    |||| |||||||||||| ||||||||||| |||||| ||||||||| ||| |||||||||||| ||||||||   |||||||| ||||||||||||||||    
T  21317534 gttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttggtttgt 21317633  T
Q  146 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgca 216  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  21317634 ttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgca 21317704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3928860 - 3928818
Alignment:
Q  1 caggaacagtcacattgcgtgaaatcagaaagtatcaaaagat 43  Q
    ||||||||||| |||||||||||||||| ||||||||||||||    
T  3928860 caggaacagtcgcattgcgtgaaatcaggaagtatcaaaagat 3928818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 30971 - 31141
Alignment:
Q  46 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 145  Q
    |||| |||||||||||| |||||||||||  ||||| ||||||||| ||| |||||||||||| ||||||||   |||||||| ||||||||||||||||    
T  30971 gttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 31070  T
Q  146 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgca 216  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  31071 ttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgca 31141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 38 - 244
Target Start/End: Complemental strand, 43479850 - 43479644
Alignment:
Q  38 aaagattggttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgt 137  Q
    |||||||||||   ||||||||||| |||||||||||||||||| | |||||||  ||||||||||||||| ||||||||  ||||||||| ||||||||    
T  43479850 aaagattggttagggaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagcttatcttgt 43479751  T
Q  138 tggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagaga 237  Q
    |||||||||||||||||| || ||||| ||||||||||||||||| ||||| ||| |||||||||||||| |||||||| | ||||| ||  |||||||     
T  43479750 tggtttgtttgaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattcaacttgcaagaagaattagaggcgagagg 43479651  T
Q  238 gcttagt 244  Q
    |||||||    
T  43479650 gcttagt 43479644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 244
Target Start/End: Original strand, 38799455 - 38799653
Alignment:
Q  46 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 145  Q
    |||| |||||| ||||| |||||||| || |||||  ||||||||| |||||| ||||| ||| ||||||||   |||||||| ||  | |||||| | |    
T  38799455 gttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctct 38799554  T
Q  146 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttagt 244  Q
    ||||||| || || |||||||| |||||||||||||||||||| ||  |||||||||| ||| | |||||| | ||||||||  | ||||| |||||||    
T  38799555 ttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttagt 38799653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 244
Target Start/End: Complemental strand, 38822062 - 38821864
Alignment:
Q  46 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 145  Q
    |||| |||||| ||||| |||||||| || |||||  ||||||||| |||||| ||||| ||| ||||||||   |||||||| ||  | |||||| | |    
T  38822062 gttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctct 38821963  T
Q  146 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttagt 244  Q
    ||||||| || || |||||||| |||||||||||||||||||| ||  |||||||||| ||| | |||||| | ||||||||  | ||||| |||||||    
T  38821962 ttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttagt 38821864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 38807079 - 38807154
Alignment:
Q  169 attcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttagt 244  Q
    |||||||||||||||||||||||  |||||||||| ||| |||||||| | ||||||||  ||||||| |||||||    
T  38807079 attcatgctaagagagttactatcatgcctaaggacattcaacttgcaagaagaatcagaggcgagagggcttagt 38807154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 41943904 - 41944074
Alignment:
Q  46 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 145  Q
    |||| |||||| ||||| |||||||| || |||||| ||||||||| |   ||||||  |||  |||| |||   || ||||| ||||| ||||| ||||    
T  41943904 gttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagcttatctggttggattgt 41944003  T
Q  146 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgca 216  Q
    |||| ||||| ||| | ||||| |||||||||||||| ||||| ||| |||| ||||| ||| ||||||||    
T  41944004 ttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaacttgca 41944074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 26592212 - 26592289
Alignment:
Q  130 tatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatatt 207  Q
    ||||||||||| |||||||| ||||| || || || ||||||||||||||| | ||||||||  ||||||||||||||    
T  26592212 tatcttgttggattgtttgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatatt 26592289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 25865735 - 25865821
Alignment:
Q  121 gctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatatt 207  Q
    ||||| || |||||||| || |||||||| ||||| ||| | ||||| |||||||||||||| || || ||| |||| |||||||||    
T  25865735 gctgaggcttatcttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatatt 25865821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 44343990 - 44344076
Alignment:
Q  121 gctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatatt 207  Q
    ||||| || ||||| || || |||||||| ||||| ||| | |||||||||||||||||||| || || ||| |||| |||||||||    
T  44343990 gctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatatt 44344076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 46 - 243
Target Start/End: Complemental strand, 12547167 - 12546970
Alignment:
Q  46 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 145  Q
    |||| |||||||||||| ||||||||||| |||||| ||||||| | ||| |||||||||||| ||||||||   |||||||| ||||||||||||||||    
T  12547167 gttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 12547068  T
Q  146 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttag 243  Q
    |||||||||| ||||| ||||| |||||||||||||| ||||||||  |||||||||||||| |||||||  ||||||| ||  ||||||||||||||    
T  12547067 ttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgctcgcagaattagaggcgagagagcttag 12546970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 46 - 243
Target Start/End: Original strand, 12531452 - 12531649
Alignment:
Q  46 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 145  Q
    |||| |||||||||||| ||||||||||| |||||| ||||||| | ||| |||||||||||| ||||||||   |||||||| ||||||||||||||||    
T  12531452 gttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgt 12531551  T
Q  146 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttag 243  Q
    |||||||||| ||||| ||||| |||||||||||||| ||||||||  |||||||||||||| |||| ||  ||||||||||  ||||||| ||||||    
T  12531552 ttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag 12531649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 9866772 - 9866668
Alignment:
Q  99 tgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcct 198  Q
    |||||||||| ||||||||   ||| |||  |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||    
T  9866772 tgtttctgctcttcaagaagctgctaaagactatcttgttggtttgtttgaagatactaacctttgtgctattcatgctaagagagttactattatgcct 9866673  T
Q  199 aagga 203  Q
     ||||    
T  9866672 gagga 9866668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 9870018 - 9870104
Alignment:
Q  123 tgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaa 209  Q
    |||||| ||| |||||||||||||| ||||||  |||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  9870018 tgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcctaaggatattaa 9870104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 243
Target Start/End: Original strand, 9894654 - 9894799
Alignment:
Q  97 gctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgc 196  Q
    |||||||||||| |||||||| | | |||||| | | ||||| |||||||||||||||| ||| |||| ||||||||||||||| ||||||||||| ||     
T  9894654 gctgtttctgctgttcaagaagttgttgaagcttgttttgttagtttgtttgaagatactaatatttgcgctattcatgctaagtgagttactattatgg 9894753  T
Q  197 ctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttag 243  Q
    | ||||||||| |||||||  ||||||||||  ||||||| ||||||    
T  9894754 c-aaggatattgaacttgctcgcagaatcagaggcgagagggcttag 9894799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 38735501 - 38735619
Alignment:
Q  70 aaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgcta 169  Q
    ||||| |||||| | ||||| | || ||||||||||||| ||||| || ||  |||||  |||||||||||||||||||||||||| || |||||| |||    
T  38735501 aaaacagatctcaggttccatagcaacgctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtacta 38735600  T
Q  170 ttcatgctaagagagttac 188  Q
    ||||||||||||| |||||    
T  38735601 ttcatgctaagagggttac 38735619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 12538675 - 12538712
Alignment:
Q  163 tgtgctattcatgctaagagagttactattgtgcctaa 200  Q
    |||||||||||||||||||||||||||||  |||||||    
T  12538675 tgtgctattcatgctaagagagttactatcatgcctaa 12538712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 38 - 215
Target Start/End: Original strand, 13576300 - 13576477
Alignment:
Q  38 aaagattggttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgt 137  Q
    ||||||||||||  ||||| ||||| ||||||||||| |||||| | || || | ||| |||||||||||| ||||||||   |||||||| ||||||||    
T  13576300 aaagattggttcgagaaattgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgt 13576399  T
Q  138 tggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgc 215  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  13576400 tggtttgtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgc 13576477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 34562730 - 34562651
Alignment:
Q  136 gttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgc 215  Q
    |||||||||||||| ||||| ||| | ||||| |||||||||||||| ||||| ||| |||||||||||||| |||||||    
T  34562730 gttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgc 34562651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 34571524 - 34571445
Alignment:
Q  136 gttggtttgtttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgc 215  Q
    |||||||||||||| ||||| ||| | ||||| |||||||||||||| ||||| ||| |||||||||||||| |||||||    
T  34571524 gttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgc 34571445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 46 - 242
Target Start/End: Original strand, 24860506 - 24860702
Alignment:
Q  46 gttcatgaaatcgctcacgatttcaaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgt 145  Q
    |||| |||||||||||| ||||||||||| |||||| | |||||||  ||||||||||||||| ||||||||   |||||||| ||||| |||||  | |    
T  24860506 gttcgtgaaatcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatctcgttggactct 24860605  T
Q  146 ttgaagatacgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagctta 242  Q
    |||||||||| |||||||| ||||||||||||||||||||||| ||| |||| ||||||||| |||| ||  ||||||||||  ||||||| |||||    
T  24860606 ttgaagatacaaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggctta 24860702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 53290720 - 53290832
Alignment:
Q  70 aaaactgatctctgattccagatcagcgctgtttctgctattcaagaaatcgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgcta 169  Q
    ||||| |||||| | ||||| | || || |||||||||| ||||| || ||| |||||| |||||||||||||||||||||||||| || |||||| | |    
T  53290720 aaaacagatctcaggttccatagcaacgttgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtacca 53290819  T
Q  170 ttcatgctaagag 182  Q
    |||||||||||||    
T  53290820 ttcatgctaagag 53290832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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