View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_low_36 (Length: 263)
Name: NF19236_low_36
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 1536171 - 1536406
Alignment:
| Q |
13 |
aatatcttgagagaatcctgcgggtctgcagcatatgacagtagcagaattggaacaatctaatgctagattggctgcctaatgatgttagctagaggtg |
112 |
Q |
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| T |
1536171 |
aatatcttgagagaatcccgcgggtctgcagcatatgacagtagcagaattggaacaatctaatgctagattggctgcctaatgatgttagctagaggtg |
1536270 |
T |
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| Q |
113 |
cctgaaagagttataagttttgtgtggattgtccttcatggaaagttaacgactaatgaaaggaagagtaagattcatttgagcatcccgttctgtgatt |
212 |
Q |
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| T |
1536271 |
cctgaaagagttataagttttgtgtggattgtccttcatggaaagttaacgactaatgaaaggaagagtaagattcatttgagcatcccgttctgtgatt |
1536370 |
T |
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| Q |
213 |
acttcagagaagaggtcgaaacaaactctatttgtg |
248 |
Q |
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| T |
1536371 |
acttcagagaagaggtcgaaacaaactctatttgtg |
1536406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 1463616 - 1463570
Alignment:
| Q |
190 |
tttgagcatcccgttctgtgattacttcagagaagaggtcgaaacaa |
236 |
Q |
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| T |
1463616 |
tttgagcatgccattctgtgattacttcagagaagaggttgaaacaa |
1463570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 26413689 - 26413818
Alignment:
| Q |
107 |
gaggtgcctgaaagagttataagttttgtgtggattgtccttcatggaaagttaacgactaatgaaaggaagagtaagattcatttgagcatcccgttct |
206 |
Q |
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| T |
26413689 |
gaggtgcttgaaagagttagaagttttgtgtggattgtcctttgtgagaagccgatgactaatggaagaaagagtaagatgcatttaagcatgccattat |
26413788 |
T |
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| Q |
207 |
gtgattacttcagagaagaggtcgaaacaa |
236 |
Q |
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| T |
26413789 |
gtgattactgcagagaagaggtcaaaacaa |
26413818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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