View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_low_40 (Length: 249)
Name: NF19236_low_40
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 21703619 - 21703378
Alignment:
| Q |
1 |
cgtagtaactccaacagctgattgtatgcctcctttgtagattggaagtatgtaaaattttcggaggg---ctggtattgaatgcctggaagaggagcta |
97 |
Q |
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| T |
21703619 |
cgtagtaactccaacagctgattgtatgccacctttgtagattggaagcatgtaaaattttcggaggagtactggtattgaatgcctggaagaggagcta |
21703520 |
T |
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| Q |
98 |
agtgagaaaatggttgaatattgctttttgcttttaatcttttaattgcctctgccttcgttaccatttgcttgctcaaacgatatcttctccatgttgg |
197 |
Q |
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| T |
21703519 |
agtgagaaaatggttgaatattgctttttccttttaatctttccattgcctgtgccttctttaccatttgcttgctcaaacgatatcttctccatgttgg |
21703420 |
T |
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| Q |
198 |
aaaatctctttgaaagcacctggtgtttgttctcatcctttg |
239 |
Q |
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| T |
21703419 |
aaaatctctttgaaagcacctggtgtttgttctcatcctttg |
21703378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 21715898 - 21716134
Alignment:
| Q |
3 |
tagtaactccaacagctgattgtatgcctcctttgtagattggaagtatgtaaaattttcggagggctggtattgaatgcctggaagaggagctaagtga |
102 |
Q |
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|||||||||||| ||||||||||| ||| | ||||| ||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||| | ||| |
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| T |
21715898 |
tagtaactccaagagctgattgtaagccgcttttgttgattggaagtaagtaaaattctcggacgactggtattgaatgcctggaagaggagcataatga |
21715997 |
T |
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| Q |
103 |
gaaaatggttgaatattgctttttgcttttaatcttttaattgcctctgccttcgttaccatttgcttgctcaaacgatatcttctccatgttggaaaat |
202 |
Q |
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| T |
21715998 |
gaaaatggttgaatatcacttttgcatcttaattttcccaatgcctctcccttctttaccattttccgtctgatacgatatcttctccatgctggaaatt |
21716097 |
T |
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| Q |
203 |
ctctttgaaagcacctggtgtttgttctcatcctttg |
239 |
Q |
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||| | ||||||| |||||||||| |||||||||||| |
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| T |
21716098 |
ctcctcgaaagcaactggtgtttgctctcatcctttg |
21716134 |
T |
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