View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_low_47 (Length: 238)
Name: NF19236_low_47
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 43145605 - 43145486
Alignment:
| Q |
1 |
tgtttggaaacacgttcaacacttttttctcgcgttccaacacaaatctactgtgatcttctaaagctaaaaatccaagcttcctagtaaacgtacgttt |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43145605 |
tgtttggaaacacgtttaacacttttttctcgcgttccaacacaaatctagtgtgatcttctaaagctaaaaatccaagcttcctagtaaacgtacgttt |
43145506 |
T |
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| Q |
101 |
ggagttgttttgatgtggaa |
120 |
Q |
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|||||||||||||||||||| |
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| T |
43145505 |
ggagttgttttgatgtggaa |
43145486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 43145144 - 43145034
Alignment:
| Q |
119 |
aaagattgcatatatgccttcaaaaggcgaagctagatcaaggatttcaatcccaacatgtatgctatataataatggcaattctaattgctaccactct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43145144 |
aaagattgcatatatgccttcaaaaggcgaagctagatcaaggatttcaatcccaacatgtatgctatatgataatggcaattctaattgctaccactct |
43145045 |
T |
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| Q |
219 |
tactgatgatg |
229 |
Q |
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|||| |||||| |
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| T |
43145044 |
tactaatgatg |
43145034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 31766015 - 31766130
Alignment:
| Q |
1 |
tgtttggaaacacgttcaacacttttttctcgcgttccaacacaaatctactgtgatcttctaaagctaaaaatccaagcttcctagtaaacgtacgttt |
100 |
Q |
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||||||||||||||||| |||| |||||||| ||||||||||||||| ||| ||||| ||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
31766015 |
tgtttggaaacacgttccacacctttttctctcgttccaacacaaatataccgtgattttccaaagctaaaaatccaagcttcttagtaaacgtacgttt |
31766114 |
T |
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| Q |
101 |
ggagttgttttgatgt |
116 |
Q |
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||||||||||||||| |
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| T |
31766115 |
agagttgttttgatgt |
31766130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 50151148 - 50151029
Alignment:
| Q |
1 |
tgtttggaaacacgttcaacacttttttctcgcgttccaacacaaatctactgtgatcttctaaagctaaaaatccaagcttcctagtaaacgtacgttt |
100 |
Q |
| |
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||||||||||||| ||||||| |||| |||||| |||||||| |||||| |||||| ||||||||||||||||||||||||| |||| ||| ||| ||| |
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| T |
50151148 |
tgtttggaaacacattcaacatttttctctcgcattccaacaaaaatctcttgtgattttctaaagctaaaaatccaagcttcttagtgaacatacattt |
50151049 |
T |
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| Q |
101 |
ggagttgttttgatgtggaa |
120 |
Q |
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|||||||||||| ||||||| |
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| T |
50151048 |
ggagttgttttgctgtggaa |
50151029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 33463263 - 33463150
Alignment:
| Q |
6 |
ggaaacacgttcaacacttttttctcgcgttccaacacaaatctactgtgatcttctaaagctaaaaatccaagcttcctagtaaacgtacgtttggagt |
105 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| || ||||| || |||||||||||||||||||| | ||||||||||||||||||| |
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| T |
33463263 |
ggaaacacgttcaacacttttttctcgtattccaacacaaatttatcgtgatttttaaaagctaaaaatccaagctt-ttcgtaaacgtacgtttggagt |
33463165 |
T |
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| Q |
106 |
tgttttgatgtggaa |
120 |
Q |
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|||||||||| |||| |
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| T |
33463164 |
tgttttgatgcggaa |
33463150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 34838204 - 34838149
Alignment:
| Q |
65 |
agctaaaaatccaagcttcctagtaaacgtacgtttggagttgttttgatgtggaa |
120 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
34838204 |
agctaaaaatccaagcttcttagtaaacgtacgtttggagttattttgatgtggaa |
34838149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 32966581 - 32966494
Alignment:
| Q |
33 |
cgttccaacacaaatctactgtgatcttctaaagctaaaaatccaagcttcctagtaaacgtacgtttggagttgttttgatgtggaa |
120 |
Q |
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||||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||| |
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| T |
32966581 |
cgttccaacacaaatatacagtgattttctaaagctaaaaatccaagcttcttagtaaaagtatgtttggtattgttttgatgtggaa |
32966494 |
T |
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