View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_low_48 (Length: 237)
Name: NF19236_low_48
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 40276739 - 40276958
Alignment:
| Q |
1 |
ttgttattcatgggttacgaacggtgttacatgaagttagtgggaagaaacatctatctaaattggttggcaaactctataggcagttggaagnnnnnnn |
100 |
Q |
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| T |
40276739 |
ttgttattgatgggttacgaacggtgttacatgaagttagtgtgaagcaacatctatctaaattggttggcaaactctataggcagttggaagaaaaaaa |
40276838 |
T |
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| Q |
101 |
gaacgacctgatttcaaatcgtgatcgtgtgagtgcaaaatataaagcaattgatcatagaattgataaggtgagcgatgatgtgatcaagtggctaaaa |
200 |
Q |
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| T |
40276839 |
gaacgacctgatttcaaatcgtgatcgtgtgagtgcaaaatataaagcaattgatcatagaattgataaggtgagcgatgatgtgatcaagtggctaaaa |
40276938 |
T |
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| Q |
201 |
gaagcagatatactcataca |
220 |
Q |
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|||||||| ||||||||||| |
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| T |
40276939 |
gaagcagacatactcataca |
40276958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 40333000 - 40333106
Alignment:
| Q |
111 |
atttcaaatcgtgatcgtgtgagtgcaaaatataaagcaattgatcatagaattgataaggtgagcgatgatgtgatcaagtggctaaaagaagcagata |
210 |
Q |
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||||||||||||||||||||| |||||||| | |||||||||||| || || ||| ||||| || |||| |||| | ||||||||||||||||||| | |
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| T |
40333000 |
atttcaaatcgtgatcgtgtgcgtgcaaaagttgaagcaattgatcgtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaagcagaca |
40333099 |
T |
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| Q |
211 |
tactcat |
217 |
Q |
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|| |||| |
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| T |
40333100 |
taatcat |
40333106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 40386278 - 40386384
Alignment:
| Q |
111 |
atttcaaatcgtgatcgtgtgagtgcaaaatataaagcaattgatcatagaattgataaggtgagcgatgatgtgatcaagtggctaaaagaagcagata |
210 |
Q |
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||||||||||||||||||||| ||||| || | |||||||||| || || ||| ||||| || |||| |||| | ||||||||||||||||||| | |
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| T |
40386278 |
atttcaaatcgtgatcgtgtgcgtgcacaagttgaagcaattgacagtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaagcagaaa |
40386377 |
T |
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| Q |
211 |
tactcat |
217 |
Q |
| |
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|| |||| |
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| T |
40386378 |
tagtcat |
40386384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 40283161 - 40283258
Alignment:
| Q |
111 |
atttcaaatcgtgatcgtgtgagtgcaaaatataaagcaattgatcatagaattgataaggtgagcgatgatgtgatcaagtggctaaaagaagcaga |
208 |
Q |
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||||||||||||||||||| | |||||||| | ||||||||||| || || ||| ||||| || |||| |||| | |||||||||||||| |||| |
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| T |
40283161 |
atttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaaacaga |
40283258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 40598700 - 40598591
Alignment:
| Q |
108 |
ctgatttcaaatcgtgatcgtgtgagtgcaaaatataaagcaattgatcatagaattgataaggtgagcgatgatgtgatcaagtggctaaaagaagcag |
207 |
Q |
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|||||||||||||| |||| |||| | | |||| | |||||| |||||| | || ||| ||||| | ||||| |||| | |||||||||||||| ||| |
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| T |
40598700 |
ctgatttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacag |
40598601 |
T |
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| Q |
208 |
atatactcat |
217 |
Q |
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|||||||||| |
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| T |
40598600 |
atatactcat |
40598591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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