View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_low_49 (Length: 237)
Name: NF19236_low_49
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6498182 - 6497962
Alignment:
| Q |
1 |
attgaatcctatatatttaattggttatgaacaatcctaaacataatttgagccaaaattcagttcataaatccattaacatatagccagctactcaaac |
100 |
Q |
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| T |
6498182 |
attgaatcctatatatttaattggctatgaacaatcctaaacataatttgagcacaaattcagttcataaatccattaacatatagccagctactcaaac |
6498083 |
T |
|
| Q |
101 |
tttcaataaaatatcacctaaattacatgttgtggaggttgagtagctgcaatgcaaatgttgatgataatcaaagttaaggttaattagaactttactc |
200 |
Q |
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| T |
6498082 |
tttcaataaaatatcacctaaattacaagttgtggagattgagtagttgcaatgcaaatattgatgataatcaaagttaagattaattagaactttactc |
6497983 |
T |
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| Q |
201 |
attatataaaccctctcatag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
6497982 |
attatataaaccctctcatag |
6497962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 6460546 - 6460710
Alignment:
| Q |
55 |
aaaattcagttcataaatccattaacatatagccagctactcaaactttcaataaaatatcacctaaattacatgttgtggaggttgagtagctgcaatg |
154 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
6460546 |
aaaattcagttcataa--ccattaacatatagccagatactcaaactttcaataaaatatcacctaaattacaagttgtggagattgagtagctgcaatg |
6460643 |
T |
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| Q |
155 |
caaatgttgatgataatcaaagttaaggttaattagaactttactcattatataaaccctctcatag |
221 |
Q |
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| T |
6460644 |
caaatattgataatattaaaagttaaggttaattagaactgtaatcattatataaaccctctcatag |
6460710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 6474895 - 6474841
Alignment:
| Q |
55 |
aaaattcagttcataaatccattaacatatagccagctactcaaactttcaataa |
109 |
Q |
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||||||||||||| ||| |||||||||||||| ||||| ||||||| |||||||| |
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| T |
6474895 |
aaaattcagttcacaaacccattaacatatagacagcttctcaaacattcaataa |
6474841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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