View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19236_low_50 (Length: 236)
Name: NF19236_low_50
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_50 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 43499362 - 43499484
Alignment:
| Q |
15 |
agaataaacaagtctacaaatttctgtttgtttccttgctgcctccttttttactttgtaaccaaaaagacaagtctacaaatgacatacaaagaaacac |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43499362 |
agaataaacaagtctacaaatttctgtttgtttccttgctgcctccttttttactttgtaaccaaaaagacaagtctacaaataacatacaaagaaacac |
43499461 |
T |
|
| Q |
115 |
aaggcactggtagtatcaaaata |
137 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
43499462 |
aaggcactagtagtatcaaaata |
43499484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 43499669 - 43499707
Alignment:
| Q |
129 |
atcaaaatataaggaaaggaaagaactagactcccacta |
167 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43499669 |
atcaaaatataagaaaaggaaagaactagactcccacta |
43499707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University