View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19236_low_53 (Length: 226)

Name: NF19236_low_53
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19236_low_53
NF19236_low_53
[»] chr4 (3 HSPs)
chr4 (1-212)||(24627616-24627827)
chr4 (1-185)||(1506879-1507063)
chr4 (1-206)||(5576768-5576968)
[»] scaffold0043 (1 HSPs)
scaffold0043 (1-184)||(69045-69229)
[»] chr3 (4 HSPs)
chr3 (1-184)||(2746090-2746274)
chr3 (18-206)||(14529863-14530050)
chr3 (12-184)||(5836160-5836333)
chr3 (30-99)||(5940020-5940089)
[»] chr2 (2 HSPs)
chr2 (1-187)||(20112445-20112630)
chr2 (119-205)||(3811479-3811565)
[»] chr6 (4 HSPs)
chr6 (1-185)||(5130153-5130337)
chr6 (1-157)||(26619555-26619711)
chr6 (1-157)||(26725468-26725624)
chr6 (26-115)||(9485959-9486048)
[»] chr8 (3 HSPs)
chr8 (53-206)||(20809672-20809824)
chr8 (30-115)||(25337030-25337115)
chr8 (29-114)||(17275850-17275935)
[»] chr1 (1 HSPs)
chr1 (26-184)||(9392590-9392748)
[»] chr5 (1 HSPs)
chr5 (40-156)||(17302873-17302990)
[»] chr7 (1 HSPs)
chr7 (73-125)||(10865275-10865327)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 24627827 - 24627616
Alignment:
Q  1 ggaatttagtgattatcgaagtttcggattctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24627827 ggaatttagtgattatcgaagtttcggattctacacttaattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaaca 24627728  T
Q  101 catttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaagatggttataaatgat 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24627727 catttaaagtttggaaatttatgcttgaaattacttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaagatggttataaatgat 24627628  T
Q  201 tccaggattgat 212  Q
    ||||||||||||    
T  24627627 tccaggattgat 24627616  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 1507063 - 1506879
Alignment:
Q  1 ggaatttagtgattatcgaagtttcggattctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaaca 100  Q
    |||||| ||| ||| | |||||||||||||||||||||  ||||||| |||| ||||||||  |||| ||| ||||||||| ||||  | |||||||||     
T  1507063 ggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatggactcagaaaacg 1506964  T
Q  101 catttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaag 185  Q
    ||||||||||||| ||| || ||||  || || ||||| |||||||| | ||||||||    |||||||||||||||||| ||||    
T  1506963 catttaaagtttgtaaaattctgctgaaatttacttactggtttgacgtagatttttctgaaataagctaaaacgtgaatctaag 1506879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 5576768 - 5576968
Alignment:
Q  1 ggaatttagtgattatcgaagtttcggattctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaaca 100  Q
    |||||| ||| ||| | |||||||||||||||||||||  ||||||| |||||| |||     |||| ||| ||||||||| ||||  | |||||||||     
T  5576768 ggaattaagtaattgttgaagtttcggattctacacttatttcccttcagtttgaatac----tttgcatgattcggattaagaatggactcagaaaacg 5576863  T
Q  101 catttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaagatggttataaatgat 200  Q
    ||||||||||||||||||| |||| ||||| ||  |||||||||||  |||||||||||   |||||||| |  ||||||| ||  ||||||||||||||    
T  5576864 catttaaagtttggaaattcatgc-tgaaaatggctacgggtttgatgtggatttttccgaaataagctacattgtgaattcaaattggttataaatgat 5576962  T
Q  201 tccagg 206  Q
    | ||||    
T  5576963 ttcagg 5576968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 69045 - 69229
Alignment:
Q  1 ggaatttagtgattatcgaagtttcggattctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaaca 100  Q
    |||||| ||| ||||||| |||||| |||||||||||| |||| ||| ||||||||||||| |||||||||||| |||||||||||  |||||||||||     
T  69045 ggaattaagtaattatcggagtttcagattctacacttaattcacttcagtttggatataaattttgtatgttttggattaggaatggattcagaaaacg 69144  T
Q  101 catttaaagtttggaaatttatgcttgaaa-ttgcttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaa 184  Q
    | ||| ||| |||||| ||||||||  ||| |||| |||||||||| | ||||||| |||   ||||||||||||||||||||||    
T  69145 cgtttgaaggttggaattttatgctgaaaatttgcctacgggtttggcttggatttgtccgaaataagctaaaacgtgaatttaa 69229  T

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Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 2746090 - 2746274
Alignment:
Q  1 ggaatttagtgattatcgaagtttcggattctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaaca 100  Q
    |||||| ||| ||||| | ||||||||||||||||||| |||| ||| ||||||||||||| |||||||||||| |||||||||||  |||||||||||     
T  2746090 ggaattaagtaattattggagtttcggattctacacttaattcacttcagtttggatataaattttgtatgttttggattaggaatggattcagaaaacg 2746189  T
Q  101 catttaaagtttggaaatttatgcttgaaa-ttgcttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaa 184  Q
    | ||| ||| |||||| ||||||||  ||| |||| |||||||||| | ||||||| |||   ||||||||||||||||||||||    
T  2746190 cgtttgaaggttggaattttatgctgaaaatttgcctacgggtttggcttggatttgtccgaaataagctaaaacgtgaatttaa 2746274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 14529863 - 14530050
Alignment:
Q  18 gaagtttcggattctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaacacatttaaagtttggaaa 117  Q
    |||||||||||||||||||||  ||||||| |||||| ||||||  |||| |||  |||||||| ||||  | |||||||||||||||||||||||||||    
T  14529863 gaagtttcggattctacacttatttcccttcagtttgaatataaactttgcatgactcggattaagaatggactcagaaaacacatttaaagtttggaaa 14529962  T
Q  118 tttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaagatggttataaatgattccagg 206  Q
    || |||| ||||| ||  |||||||||||  |||||||||||   |||||||| || ||||||| ||  ||||||||||||||| ||||    
T  14529963 ttcatgc-tgaaaatggctacgggtttgatgtggatttttccgaaataagctacaatgtgaattcaaattggttataaatgatttcagg 14530050  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 5836333 - 5836160
Alignment:
Q  12 attatcgaagtttcggattctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaacacatttaaagtt 111  Q
    ||||| ||| ||| ||| ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||  ||| ||||||| | ||| |||||    
T  5836333 attattgaatttttggactctacacttaattcccttcagtttggatataaattttgtatgtttcggattaggaatggatttagaaaacgcgtttgaagtt 5836234  T
Q  112 tggaaatttatgct--tgaaattgcttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaa 184  Q
    ||| | ||||||||    ||||||| |||||||||| |  |||||||||    ||||||||||||||||||||||    
T  5836233 tgg-attttatgctgaaaaaattgcctacgggtttggccaggatttttctgtaataagctaaaacgtgaatttaa 5836160  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 5940089 - 5940020
Alignment:
Q  30 tctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaac 99  Q
    ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||  ||| |||||||    
T  5940089 tctacacttaattcccttcagtttggatataaattttgtatgtttcggattaggaatggatttagaaaac 5940020  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 20112630 - 20112445
Alignment:
Q  1 ggaatttagtgattatcgaagtttcggattctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaaca 100  Q
    |||||| ||| ||||| | | |||| |||||||||||| ||| |||| |||| |||||||| ||||||||| |||||||||| |||| |||||||||||     
T  20112630 ggaattgagtaattattggattttcagattctacacttaatttcctt-agttgggatataaattttgtatgattcggattagaaatagattcagaaaacg 20112532  T
Q  101 catttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaagat 187  Q
    | |||||||||||||  ||  ||||  ||| |||||||||||||| ||||||||||||| | ||||||||||| |||| ||||||||    
T  20112531 cgtttaaagtttggattttggtgctgaaaactgcttacgggtttggcatggatttttccggaataagctaaaaagtgagtttaagat 20112445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 3811479 - 3811565
Alignment:
Q  119 ttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaagatggttataaatgattccag 205  Q
    |||||||  |||| ||||||| |||||||||||| |||| |   ||||||||||||| || |||||| |||||||||||||||||||    
T  3811479 ttatgctgaaaatggcttacgagtttgacatggactttttcgaaataagctaaaacgagattttaagttggttataaatgattccag 3811565  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 5130153 - 5130337
Alignment:
Q  1 ggaatttagtgattatcgaagtttcggattctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaaca 100  Q
    |||||| ||| ||| | |||||||||||||||||||||  ||||||| |||| ||||||||  |||| ||| ||||||||| ||||  | ||||| |||     
T  5130153 ggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatggactcagagaacg 5130252  T
Q  101 catttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaag 185  Q
    ||||||||||||| ||| || ||||  || || |||||||||||||||| |||||||||   |||||||||||||||||| ||||    
T  5130253 catttaaagtttgtaaaattctgctgaaatttacttacgggtttgacatagatttttccgaaataagctaaaacgtgaatctaag 5130337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 26619555 - 26619711
Alignment:
Q  1 ggaatttagtgattatcgaagtttcggattctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaaca 100  Q
    |||||| ||| ||| | ||||| |||||||||||||||  ||||||| |||| ||||||||  |||| ||| ||||||||| ||||  | |||||||||     
T  26619555 ggaattaagtaattgttgaagtctcggattctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatggactcagaaaacg 26619654  T
Q  101 catttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatggattttt 157  Q
    ||||||||||||| ||| || ||||  || || ||||||||||||| || |||||||    
T  26619655 catttaaagtttgtaaaattctgctgaaatttacttacgggtttgagatagattttt 26619711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 26725468 - 26725624
Alignment:
Q  1 ggaatttagtgattatcgaagtttcggattctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaaca 100  Q
    |||||| ||| ||| | ||||| |||||||||||||||  ||||||| |||| ||||||||  |||| ||| ||||||||| ||||  | |||||||||     
T  26725468 ggaattaagtaattgttgaagtctcggattctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatggactcagaaaacg 26725567  T
Q  101 catttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatggattttt 157  Q
    ||||||||||||| ||| || ||||  || || ||||||||||||| || |||||||    
T  26725568 catttaaagtttgtaaaattctgctgaaatttacttacgggtttgagatagattttt 26725624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 9485959 - 9486048
Alignment:
Q  26 ggattctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaacacatttaaagtttgga 115  Q
    ||||||||||||  |||| ||| ||||||||||||| ||||||||| | ||||| ||||| |||| |||||||  | ||| |||||||||    
T  9485959 ggattctacactcaattctcttcagtttggatataaattttgtatggtacggatcaggaacaaatacagaaaatgcgtttgaagtttgga 9486048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 206
Target Start/End: Original strand, 20809672 - 20809824
Alignment:
Q  53 tggatataatttttgtatgtttcggattaggaataaattcagaaaacacatttaaagtttggaaatttatgcttgaaattgcttacgggtttgacatgga 152  Q
    ||||||||| ||||||||||||| ||||| |||   ||||||||||| ||||||||||||||||||| || ||  |||| || |||||||||||  ||||    
T  20809672 tggatataaattttgtatgtttcagattaagaacggattcagaaaacgcatttaaagtttggaaattcatactgcaaatggc-tacgggtttgatgtgga 20809770  T
Q  153 tttttccaggataagctaaaacgtgaatttaagatggttataaatgattccagg 206  Q
    |||||||   |||||||| || ||||||| ||  ||||||||||||||| ||||    
T  20809771 tttttccgaaataagctacaatgtgaattcaaattggttataaatgatttcagg 20809824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 25337115 - 25337030
Alignment:
Q  30 tctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaacacatttaaagtttgga 115  Q
    ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||  ||| ||||||| | ||| |||||||||    
T  25337115 tctacacttaattcccttcagtttggatataaattttgtatgtttcggattaggaatggatttagaaaacgcgtttgaagtttgga 25337030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 17275935 - 17275850
Alignment:
Q  29 ttctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaacacatttaaagtttgg 114  Q
    ||||||| ||||||||||| ||||||||||||  ||| ||||| ||| |||||| |||  ||||  ||||| ||||| ||||||||    
T  17275935 ttctacatttgattcccttcagtttggatatagatttggtatgattctgattagaaatggattcgaaaaacgcatttgaagtttgg 17275850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 9392748 - 9392590
Alignment:
Q  26 ggattctacacttgattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaacacatttaaagtttggaaatttatgct 125  Q
    ||||||||||||| |||||||| |||||  ||| || |||||||||||||||||| |||||  ||||| |||||   ||| ||||| || | ||||||||    
T  9392748 ggattctacacttaattcccttcagtttaaatacaaattttgtatgtttcggatttggaatggattcacaaaacgtgtttcaagttagg-attttatgct 9392650  T
Q  126 tgaaa-ttgcttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaa 184  Q
      ||| |||| |||||||| | | ||||||||| |   ||||||||||||||||||||||    
T  9392649 gaaaatttgcctacgggttcggcttggattttttcgaaataagctaaaacgtgaatttaa 9392590  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 17302873 - 17302990
Alignment:
Q  40 attccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaacacatttaaagtttggaaatttatgcttgaaattgcttacg 139  Q
    |||||||| | || |||||||| ||||||||| |||||||||| ||| ||||||||||||| |||  |||||||| || || || | |||| | ||||||    
T  17302873 attcccttcaattcggatataaattttgtatgattcggattagaaatgaattcagaaaacatattcgaagtttggtaaattctgttggaaaatacttacg 17302972  T
Q  140 gg-tttgacatggatttt 156  Q
    || |||| ||||||||||    
T  17302973 ggttttgtcatggatttt 17302990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 10865327 - 10865275
Alignment:
Q  73 ttcggattaggaataaattcagaaaacacatttaaagtttggaaatttatgct 125  Q
    |||||| ||||||| ||||| |||||||  |||||||||||||||||| ||||    
T  10865327 ttcggaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgct 10865275  T

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