View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19236_low_6 (Length: 526)

Name: NF19236_low_6
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19236_low_6
NF19236_low_6
[»] chr4 (35 HSPs)
chr4 (1-105)||(47199341-47199445)
chr4 (1-104)||(55159179-55159282)
chr4 (5-105)||(28684182-28684282)
chr4 (54-104)||(47198604-47198654)
chr4 (55-107)||(3847882-3847934)
chr4 (55-103)||(10424123-10424171)
chr4 (55-98)||(3848578-3848621)
chr4 (55-104)||(11417686-11417735)
chr4 (55-104)||(29651332-29651381)
chr4 (55-103)||(11417937-11417985)
chr4 (63-103)||(25371553-25371593)
chr4 (55-103)||(36865717-36865765)
chr4 (55-114)||(10425059-10425118)
chr4 (1-103)||(43738419-43738521)
chr4 (54-104)||(55160066-55160115)
chr4 (55-104)||(26611283-26611332)
chr4 (55-104)||(31836460-31836509)
chr4 (63-96)||(37275095-37275128)
chr4 (55-104)||(52757812-52757861)
chr4 (67-103)||(28683508-28683544)
chr4 (63-103)||(38694962-38695002)
chr4 (55-103)||(39523271-39523319)
chr4 (55-103)||(45235960-45236008)
chr4 (1-41)||(47524141-47524181)
chr4 (55-98)||(38143737-38143780)
chr4 (55-105)||(30478307-30478357)
chr4 (54-104)||(42544487-42544537)
chr4 (55-104)||(21166375-21166424)
chr4 (57-98)||(26610350-26610391)
chr4 (55-104)||(47377598-47377647)
chr4 (55-104)||(48013316-48013365)
chr4 (55-103)||(30808621-30808669)
chr4 (55-103)||(42545563-42545611)
chr4 (55-103)||(45230365-45230413)
chr4 (55-103)||(47376852-47376900)
[»] chr5 (21 HSPs)
chr5 (1-104)||(13654932-13655035)
chr5 (55-113)||(8204110-8204168)
chr5 (189-252)||(37894449-37894512)
chr5 (55-104)||(33002816-33002865)
chr5 (55-103)||(15184017-15184065)
chr5 (107-224)||(28521311-28521424)
chr5 (56-103)||(39950404-39950451)
chr5 (55-105)||(36626630-36626680)
chr5 (57-99)||(39167442-39167484)
chr5 (56-105)||(2319968-2320017)
chr5 (54-103)||(13655659-13655708)
chr5 (63-98)||(33001937-33001972)
chr5 (55-97)||(4607470-4607512)
chr5 (55-105)||(13404703-13404753)
chr5 (55-104)||(8040444-8040493)
chr5 (55-104)||(12190158-12190207)
chr5 (55-103)||(686417-686464)
chr5 (55-103)||(7625473-7625521)
chr5 (55-103)||(26688166-26688214)
chr5 (55-103)||(26957897-26957945)
chr5 (67-103)||(39950444-39950480)
[»] chr8 (27 HSPs)
chr8 (1-103)||(39254787-39254889)
chr8 (1-103)||(62186-62288)
chr8 (1-103)||(44752516-44752618)
chr8 (1-91)||(1366559-1366649)
chr8 (54-105)||(61452-61503)
chr8 (54-103)||(1365829-1365878)
chr8 (111-252)||(35861028-35861163)
chr8 (1-103)||(216393-216495)
chr8 (1-103)||(692953-693055)
chr8 (1-103)||(697162-697264)
chr8 (1-103)||(730016-730118)
chr8 (1-103)||(853911-854013)
chr8 (1-45)||(12351121-12351165)
chr8 (189-252)||(5099809-5099872)
chr8 (54-105)||(39255751-39255802)
chr8 (54-104)||(44751607-44751657)
chr8 (55-104)||(41859309-41859358)
chr8 (55-103)||(5035276-5035324)
chr8 (55-104)||(5034897-5034946)
chr8 (55-104)||(34992264-34992313)
chr8 (55-96)||(37639718-37639759)
chr8 (54-104)||(25876520-25876570)
chr8 (66-104)||(44098432-44098470)
chr8 (55-96)||(27918047-27918088)
chr8 (55-107)||(32328766-32328818)
chr8 (55-103)||(32536708-32536756)
chr8 (55-103)||(42345166-42345214)
[»] chr6 (20 HSPs)
chr6 (1-103)||(9574517-9574619)
chr6 (55-103)||(7531829-7531877)
chr6 (187-250)||(9729818-9729881)
chr6 (55-104)||(7193337-7193386)
chr6 (55-104)||(7532440-7532489)
chr6 (55-103)||(33480628-33480676)
chr6 (55-98)||(22582479-22582522)
chr6 (55-98)||(22587310-22587353)
chr6 (55-96)||(33018416-33018457)
chr6 (55-103)||(3543063-3543111)
chr6 (63-103)||(15083326-15083366)
chr6 (55-103)||(22579935-22579983)
chr6 (55-103)||(24125972-24126020)
chr6 (55-103)||(33018167-33018215)
chr6 (55-98)||(3542819-3542862)
chr6 (55-98)||(33479701-33479744)
chr6 (55-97)||(26227408-26227450)
chr6 (55-104)||(14337557-14337606)
chr6 (54-98)||(9573640-9573684)
chr6 (55-103)||(24126718-24126766)
[»] chr3 (16 HSPs)
chr3 (1-103)||(17227894-17227996)
chr3 (55-106)||(36750437-36750488)
chr3 (57-103)||(17226968-17227014)
chr3 (55-98)||(42145278-42145321)
chr3 (55-103)||(19132812-19132860)
chr3 (55-103)||(32489946-32489994)
chr3 (56-103)||(31556217-31556264)
chr3 (63-98)||(32490203-32490238)
chr3 (55-106)||(43638078-43638129)
chr3 (63-105)||(41755497-41755539)
chr3 (55-96)||(37105077-37105118)
chr3 (63-104)||(44687171-44687212)
chr3 (55-96)||(49757182-49757223)
chr3 (55-103)||(19132563-19132611)
chr3 (63-103)||(38923673-38923713)
chr3 (55-103)||(45242987-45243035)
[»] chr1 (21 HSPs)
chr1 (1-104)||(35616720-35616824)
chr1 (1-103)||(48870699-48870801)
chr1 (55-104)||(51987826-51987875)
chr1 (55-103)||(51988464-51988512)
chr1 (55-105)||(51974435-51974485)
chr1 (55-103)||(8560839-8560887)
chr1 (55-103)||(16270207-16270255)
chr1 (1-45)||(17494470-17494514)
chr1 (55-103)||(23440865-23440913)
chr1 (63-105)||(48972453-48972495)
chr1 (58-103)||(35615767-35615812)
chr1 (54-103)||(37874064-37874113)
chr1 (55-104)||(43737978-43738027)
chr1 (63-103)||(193850-193890)
chr1 (55-103)||(9948887-9948935)
chr1 (1-45)||(37874907-37874951)
chr1 (57-104)||(48869768-48869815)
chr1 (55-96)||(1012554-1012595)
chr1 (66-103)||(48971705-48971742)
chr1 (55-103)||(194701-194749)
chr1 (55-103)||(43737729-43737777)
[»] scaffold1037 (1 HSPs)
scaffold1037 (1-97)||(2845-2941)
[»] scaffold1031 (1 HSPs)
scaffold1031 (1-97)||(2964-3060)
[»] chr2 (20 HSPs)
chr2 (54-104)||(5276464-5276514)
chr2 (55-103)||(13134318-13134366)
chr2 (191-250)||(42428177-42428236)
chr2 (55-105)||(14573999-14574049)
chr2 (55-105)||(21471015-21471065)
chr2 (55-103)||(21471954-21472002)
chr2 (1-41)||(36475841-36475881)
chr2 (57-105)||(45139690-45139738)
chr2 (57-104)||(41042541-41042588)
chr2 (55-104)||(37547997-37548046)
chr2 (55-103)||(4479702-4479750)
chr2 (55-103)||(14573261-14573309)
chr2 (55-103)||(37157522-37157570)
chr2 (1-40)||(5277341-5277380)
chr2 (55-105)||(4478849-4478899)
chr2 (54-96)||(33433159-33433201)
chr2 (67-104)||(1164788-1164825)
chr2 (55-104)||(19521917-19521966)
chr2 (56-105)||(43789428-43789477)
chr2 (57-100)||(5278398-5278442)
[»] chr7 (16 HSPs)
chr7 (55-105)||(38778852-38778902)
chr7 (55-105)||(41194511-41194561)
chr7 (55-104)||(37468909-37468958)
chr7 (55-103)||(668179-668227)
chr7 (55-103)||(17145622-17145670)
chr7 (55-103)||(37469005-37469053)
chr7 (55-103)||(38779563-38779611)
chr7 (55-98)||(7677809-7677852)
chr7 (187-250)||(15011366-15011429)
chr7 (55-104)||(4261596-4261645)
chr7 (55-103)||(669103-669151)
chr7 (63-98)||(7677422-7677457)
chr7 (55-98)||(42455040-42455083)
chr7 (55-104)||(37864307-37864356)
chr7 (56-105)||(45887981-45888030)
chr7 (55-103)||(38072291-38072339)
[»] scaffold0311 (1 HSPs)
scaffold0311 (55-104)||(160-209)
[»] scaffold0041 (2 HSPs)
scaffold0041 (55-103)||(27221-27269)
scaffold0041 (55-103)||(27575-27623)


Alignment Details
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 47199341 - 47199445
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||        |||||||||||||||||||||||||||| ||||||||||||||||||    
T  47199341 tggatagactataataacaatggtggtactactcaatctaatggtaaaaaaatgactttcctatggtgggaaagaagtctcttttcccaaattaaatgcc 47199440  T
Q  101 accta 105  Q
    |||||    
T  47199441 accta 47199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 55159282 - 55159179
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||        |||||||| ||||| ||||||||||||||||||||||||||||| ||    
T  55159282 tggatagactataataataatggtggtactactcaatctaatggtaaaaaaaagactttcccatggtaggaaagaagtctcctttcccaaattaaatacc 55159183  T
Q  101 acct 104  Q
    ||||    
T  55159182 acct 55159179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 28684182 - 28684282
Alignment:
Q  5 tagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||||||||||||| |||||||||||||||||||||||         ||||||||||||| ||||| |||||||||||||||||||||||| |||||    
T  28684182 tagactataataacaatggtggtactactcaatctaatggtaaaaaaaaaactttcctatggtaggaaaaaagtctcctttcccaaattaaatgtcacct 28684281  T
Q  105 a 105  Q
    |    
T  28684282 a 28684282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 47198654 - 47198604
Alignment:
Q  54 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  47198654 gactttcccatggtgggaaagaagtctcctttcccaaattaaatgtcacct 47198604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 3847934 - 3847882
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacctaga 107  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||| ||||    
T  3847934 actttcccatggtgggaaaaaagtctcctttcccaaattaaatgccacttaga 3847882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 10424171 - 10424123
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  10424171 actttcctatggtgggaaagaactctcctttcccaaattaaatggcacc 10424123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 3848578 - 3848621
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 98  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  3848578 actttcccatggtgggaaagaagtctcctttcccaaattaaatg 3848621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 11417735 - 11417686
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  11417735 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 11417686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 29651332 - 29651381
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  29651332 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 29651381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 11417937 - 11417985
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  11417937 actttcccatggtgggaaagaactctcctttcccaaattaaatgacacc 11417985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 25371553 - 25371593
Alignment:
Q  63 atggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  25371553 atggtgggaaagaagtctcctttcccaaattaaatgtcacc 25371593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 36865717 - 36865765
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  36865717 actttcccatggtgggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 10425059 - 10425118
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacctagacttatag 114  Q
    ||||||| |||||||||||||| |||||||||| |||||||||| |||||  ||||||||    
T  10425059 actttcccatggtgggaaagaactctcctttcctaaattaaatggcaccttaacttatag 10425118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 43738419 - 43738521
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||||        |||||||| ||||||| |||||||| || |||| ||  ||||||| |    
T  43738419 tggatagactatagtaataatggtggtactactcaatctaatggttaagaaaagactttcccatggtggaaaagaagtatcatttctcaggttaaatggc 43738518  T
Q  101 acc 103  Q
    |||    
T  43738519 acc 43738521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 55160066 - 55160115
Alignment:
Q  54 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  55160066 gactttcccatggtgagaaa-aagtctcctttcccaaattaaatgccacct 55160115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 26611283 - 26611332
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| ||||||||||| || ||||||||||||||||||||| |||||    
T  26611283 actttcccatggtgggaaaaaactctcctttcccaaattaaatgacacct 26611332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 31836460 - 31836509
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||| |||||    
T  31836460 actttcccatggtgggaaagaactctcctttctcaaattaaatggcacct 31836509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 37275128 - 37275095
Alignment:
Q  63 atggtgggaaagaagtctcctttcccaaattaaa 96  Q
    ||||||||||||||||||||||||||||||||||    
T  37275128 atggtgggaaagaagtctcctttcccaaattaaa 37275095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 52757861 - 52757812
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    |||||||||||| |||||| |||||| ||||||||||||||||| |||||    
T  52757861 actttcctatggagggaaaaaagtcttctttcccaaattaaatggcacct 52757812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 28683544 - 28683508
Alignment:
Q  67 tgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||||||||||||||||| ||||||||||||||||||    
T  28683544 tgggaaagaagtctccttccccaaattaaatgccacc 28683508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 38694962 - 38695002
Alignment:
Q  63 atggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  38694962 atggtgggaaagaactctcctttcccaaattaaatggcacc 38695002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 39523271 - 39523319
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  39523271 actttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 39523319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 45235960 - 45236008
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| |||||||| |||||||||||| ||||    
T  45235960 actttcccatggtgggaaagaactctccttttccaaattaaatggcacc 45236008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 47524141 - 47524181
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaa 41  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  47524141 tggataggctataataacaatggtggtactactcaatctaa 47524181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 38143737 - 38143780
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 98  Q
    ||||||| |||||||||||||| |||| ||||||||||||||||    
T  38143737 actttcccatggtgggaaagaactctcatttcccaaattaaatg 38143780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 30478357 - 30478307
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||||    
T  30478357 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcaccta 30478307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 42544537 - 42544487
Alignment:
Q  54 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    |||||| | ||||||||||| |||||| ||||||||||||||||| |||||    
T  42544537 gacttttccatggtgggaaaaaagtcttctttcccaaattaaatggcacct 42544487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 21166375 - 21166424
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| ||| |||||||||| ||||||||| ||||||||||| |||||    
T  21166375 actttcccatgatgggaaagaactctcctttctcaaattaaatggcacct 21166424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 26610391 - 26610350
Alignment:
Q  57 tttcctatggtgggaaagaagtctcctttcccaaattaaatg 98  Q
    ||||| |||||||||||||| |||| ||||||||||||||||    
T  26610391 tttcccatggtgggaaagaactctcatttcccaaattaaatg 26610350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 47377598 - 47377647
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| ||||||||||| || || |||||||||||||||||| |||||    
T  47377598 actttcccatggtgggaaacaactcccctttcccaaattaaatggcacct 47377647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 48013365 - 48013316
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| |||||    
T  48013365 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacct 48013316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 30808669 - 30808621
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||||||||||| || ||||||||||||  ||||||||||||    
T  30808669 actttcccatggtgggaaacaactctcctttcccattttaaatgccacc 30808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 42545563 - 42545611
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||||||| ||||||| |||| | ||||||||||||||||| ||||    
T  42545563 actttcctatgatgggaaaaaagtgtactttcccaaattaaatggcacc 42545611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 45230413 - 45230365
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| |||| |||||| ||||||||| ||||    
T  45230413 actttcccatggtgggaaagaactctcttttcccgaattaaatggcacc 45230365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 47376900 - 47376852
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||| ||||||| || || |||||||||||||||||||||||    
T  47376900 actttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 47376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 13655035 - 13654932
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||| |    
T  13655035 tggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaagactttcctatggtgggaaagaagtctcctttcccaaattaaatgtc 13654936  T
Q  101 acct 104  Q
    ||||    
T  13654935 acct 13654932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 8204168 - 8204110
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacctagacttata 113  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |||||    
T  8204168 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacctagagttata 8204110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 37894449 - 37894512
Alignment:
Q  189 aattttcacttttaaagtgcattggaaagtggaaataagtcttcaaaagctaatccaaacacac 252  Q
    ||||||||| ||||||||||||||| |||||||||| || || ||||| |||||||||||||||    
T  37894449 aattttcacgtttaaagtgcattgggaagtggaaatgagcctccaaaaactaatccaaacacac 37894512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 33002816 - 33002865
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  33002816 actttcccatggtgggaaagaactctcctttcccaaattaaatgacacct 33002865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 15184017 - 15184065
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  15184017 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 15184065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 28521311 - 28521424
Alignment:
Q  107 acttataggttgtttgtttttgctgaaaattagcaacagacgtgcgtttaaagtagaaactattaattgtggcttcacaaacaattttcacttttaaagt 206  Q
    |||| ||| |||||||||| ||  | ||||| |||| |||| |||||||||||||||| |||||||||||  ||||    | ||||||||  ||||||||    
T  28521311 acttttagcttgtttgtttatgtagcaaattggcaagagacttgcgtttaaagtagaagctattaattgtaacttc----ataattttcatgtttaaagt 28521406  T
Q  207 gcattggaaagtggaaat 224  Q
    | ||||||||||||||||    
T  28521407 gaattggaaagtggaaat 28521424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 39950451 - 39950404
Alignment:
Q  56 ctttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  39950451 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 39950404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 36626630 - 36626680
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    ||||||| |||||||||||||| |||| |||||||||||||||| ||||||    
T  36626630 actttcccatggtgggaaagaactctcatttcccaaattaaatggcaccta 36626680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 39167442 - 39167484
Alignment:
Q  57 tttcctatggtgggaaagaagtctcctttcccaaattaaatgc 99  Q
    ||||| ||| |||||||||||||||||||||||||||||||||    
T  39167442 tttcccatgatgggaaagaagtctcctttcccaaattaaatgc 39167484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 2319968 - 2320017
Alignment:
Q  56 ctttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    |||||||||||||||||| || |  |||||||||||||||||||||||||    
T  2319968 ctttcctatggtgggaaaaaactagcctttcccaaattaaatgccaccta 2320017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 13655659 - 13655708
Alignment:
Q  54 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||||||| ||  ||||||||||||||| |||||||||||||||||||||    
T  13655659 gactttcccataatgggaaagaagtctcttttcccaaattaaatgccacc 13655708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 98
Target Start/End: Complemental strand, 33001972 - 33001937
Alignment:
Q  63 atggtgggaaagaagtctcctttcccaaattaaatg 98  Q
    |||||||||||||| |||||||||||||||||||||    
T  33001972 atggtgggaaagaactctcctttcccaaattaaatg 33001937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 4607512 - 4607470
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaat 97  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||    
T  4607512 actttcccatggtgggaaaaaagtctactttcccaaattaaat 4607470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 13404703 - 13404753
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    ||||||| ||||||||||| |||  ||| ||||||||||||||||||||||    
T  13404703 actttcccatggtgggaaaaaagagtccgttcccaaattaaatgccaccta 13404753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 8040444 - 8040493
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| | |||||||||||| | ||||||||||||||||||| |||||    
T  8040444 actttcccacggtgggaaagaaatttcctttcccaaattaaatggcacct 8040493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 12190158 - 12190207
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| ||||||||||| || |||| |||||||||||||||| |||||    
T  12190158 actttcccatggtgggaaaaaactctcttttcccaaattaaatggcacct 12190207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 686464 - 686417
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||||||||||| || ||||||||||||||||||||| ||||    
T  686464 actttcccatggtgggaaa-aactctcctttcccaaattaaatggcacc 686417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 7625521 - 7625473
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||    
T  7625521 actttcccatgatgggaaagaagtttgctttcccaaattaaatgacacc 7625473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 26688214 - 26688166
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||    
T  26688214 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 26688166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 26957945 - 26957897
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||    
T  26957945 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 26957897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 39950444 - 39950480
Alignment:
Q  67 tgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  39950444 tgggaaagaactctcctttcccaaattaaatggcacc 39950480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 39254889 - 39254787
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    |||||||||||||||||||||  |||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||||||||||||    
T  39254889 tggatagactataataacaatgatggtactactcaatctaatgataaaaaaaagactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 39254790  T
Q  101 acc 103  Q
    |||    
T  39254789 acc 39254787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 62186 - 62288
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |        ||||||||||||||||||||||||||||||||| ||||||||||| |    
T  62186 tggatagactataataacaatggtggtactactcaatctaatgataaaaaaatgactttcctatggtgggaaagaagtctcctttctcaaattaaatgtc 62285  T
Q  101 acc 103  Q
    |||    
T  62286 acc 62288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 44752516 - 44752618
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||        || |||||||||||||||||||||||||||||||||| |||||||||    
T  44752516 tggatagactataataacaatggtggtactactcaatttaatggtaaaaaaaagattttcctatggtgggaaagaagtctcctttcccaagttaaatgcc 44752615  T
Q  101 acc 103  Q
    |||    
T  44752616 acc 44752618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 1366559 - 1366649
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaa 91  Q
    ||||||||||||||||||||| |||||||||||||||||||||||        |||||| ||||||||| |||||||||||||||||||||    
T  1366559 tggatagactataataacaatggtggtactactcaatctaatggtaaaaaaatgacttttctatggtggaaaagaagtctcctttcccaaa 1366649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 61503 - 61452
Alignment:
Q  54 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  61503 gactttcccatggtgggaaagaagtctcctttcccaaattaaatgccaccta 61452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 1365878 - 1365829
Alignment:
Q  54 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1365878 gactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 35861028 - 35861163
Alignment:
Q  111 ataggttgtttgtttttgctgaaaattagcaacagacgtgcgtttaaagtagaaactattaattgtggcttcacaaacaattttcacttttaaagtgcat 210  Q
    |||| |||||| |||||||   ||||| |||||| |||||||||||| |||||||||| |||||||||||||    | ||||||||| |||||  ||||     
T  35861028 atagtttgtttatttttgcgataaattggcaacaaacgtgcgtttaaggtagaaactactaattgtggcttc----ataattttcacatttaa--tgcac 35861121  T
Q  211 tggaaagtggaaataagtcttcaaaagctaatccaaacacac 252  Q
    ||| |||||||||| || || |||||||||||||||| ||||    
T  35861122 tgggaagtggaaatgagcctccaaaagctaatccaaatacac 35861163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 216495 - 216393
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||        |||||| | || ||||||||||||| | |||||||| |||||||| |    
T  216495 tggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaagtattctttcccagattaaatggc 216396  T
Q  101 acc 103  Q
    |||    
T  216395 acc 216393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 693055 - 692953
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||        |||||| | || ||||||||||||| | |||||||| |||||||| |    
T  693055 tggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaagtattctttcccagattaaatggc 692956  T
Q  101 acc 103  Q
    |||    
T  692955 acc 692953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 697264 - 697162
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||        |||||| | || ||||||||||||| | |||||||| |||||||| |    
T  697264 tggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaagtattctttcccagattaaatggc 697165  T
Q  101 acc 103  Q
    |||    
T  697164 acc 697162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 730118 - 730016
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||        |||||| | || ||||||||||||| | |||||||| |||||||| |    
T  730118 tggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaagtattctttcccagattaaatggc 730019  T
Q  101 acc 103  Q
    |||    
T  730018 acc 730016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 854013 - 853911
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||        |||||| | || ||||||||||||| | |||||||| |||||||| |    
T  854013 tggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaagtattctttcccagattaaatggc 853914  T
Q  101 acc 103  Q
    |||    
T  853913 acc 853911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12351165 - 12351121
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggt 45  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  12351165 tggatagactataataacaatggtggtactactcaatctaatggt 12351121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 5099872 - 5099809
Alignment:
Q  189 aattttcacttttaaagtgcattggaaagtggaaataagtcttcaaaagctaatccaaacacac 252  Q
    ||||||||||||||||||||||   |||||| |||| ||||| |||||||||||||||||||||    
T  5099872 aattttcacttttaaagtgcatctaaaagtgaaaatgagtctccaaaagctaatccaaacacac 5099809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 39255751 - 39255802
Alignment:
Q  54 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  39255751 gactttcccatggtgggaaagaagtctcatttcccaagttaaatgccaccta 39255802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 44751657 - 44751607
Alignment:
Q  54 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    |||||||| ||| |||||||||||||||||||||||| |||||||||||||    
T  44751657 gactttcccatgatgggaaagaagtctcctttcccaagttaaatgccacct 44751607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 41859358 - 41859309
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  41859358 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 41859309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 5035276 - 5035324
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  5035276 actttcctatggtggaaaagaactctcctttcccaaattaaatggcacc 5035324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 5034946 - 5034897
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||| |||||    
T  5034946 actttcccatggtggaaaagaactctcctttcccaaattaaatggcacct 5034897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 34992264 - 34992313
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| ||||||||||| || ||||||||||||||||||||| |||||    
T  34992264 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcacct 34992313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 37639759 - 37639718
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaa 96  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  37639759 actttcccatggtgggaaagaactctcctttcccaaattaaa 37639718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 25876570 - 25876520
Alignment:
Q  54 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    |||||||| ||||||||||| || ||| ||||||||||||||||| |||||    
T  25876570 gactttcccatggtgggaaaaaaatcttctttcccaaattaaatggcacct 25876520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 44098432 - 44098470
Alignment:
Q  66 gtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  44098432 gtgggaaagaactctcctttcccaaattaaatggcacct 44098470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 27918047 - 27918088
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaa 96  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||    
T  27918047 actttcccatggtgggaaaaaagtctcatttcccaaattaaa 27918088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 32328766 - 32328818
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacctaga 107  Q
    ||||||||||  ||||||| || | ||||||||||||||||| ||||||||||    
T  32328766 actttcctatcatgggaaaaaactatcctttcccaaattaaacgccacctaga 32328818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 32536756 - 32536708
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| |||| ||||| |||||||||| ||||    
T  32536756 actttcccatggtgggaaagaactctcatttcctaaattaaatggcacc 32536708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 42345214 - 42345166
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||    
T  42345214 actttcccatgatgggaaagaagtttactttcccaaattaaatggcacc 42345166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 9574517 - 9574619
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||        ||||||||||||||||||||||||||||||||||||| |||||||||    
T  9574517 tggatagactataataacaatggtggtactactcaatttaatggtaaaaaaaagactttcctatggtgggaaagaagtctcctttcccaagttaaatgcc 9574616  T
Q  101 acc 103  Q
    |||    
T  9574617 acc 9574619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 7531877 - 7531829
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  7531877 actttcccatggtaggaaagaagtctcctttcccaaattaaatgccacc 7531829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 9729818 - 9729881
Alignment:
Q  187 acaattttcacttttaaagtgcattggaaagtggaaataagtcttcaaaagctaatccaaacac 250  Q
    ||||||||||| ||||||||||||||| ||||||| || || || |||||||||||||||||||    
T  9729818 acaattttcacgtttaaagtgcattgggaagtggagatgagcctccaaaagctaatccaaacac 9729881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 7193386 - 7193337
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  7193386 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 7193337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 7532440 - 7532489
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  7532440 actttcccatggtgaaaaagaagtctcctttcccaaattaaatgccacct 7532489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 33480628 - 33480676
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  33480628 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 22582479 - 22582522
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 98  Q
    ||||||| |||||||||||||| |||||||||||||||||||||    
T  22582479 actttcccatggtgggaaagaactctcctttcccaaattaaatg 22582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 22587310 - 22587353
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 98  Q
    ||||||| |||||||||||||| |||||||||||||||||||||    
T  22587310 actttcccatggtgggaaagaactctcctttcccaaattaaatg 22587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 33018416 - 33018457
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaa 96  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  33018416 actttcccatggtgggaaagaactctcctttcccaaattaaa 33018457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 3543063 - 3543111
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||||||||||| || ||||||||||||||||||||| ||||    
T  3543063 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 3543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 15083326 - 15083366
Alignment:
Q  63 atggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  15083326 atggtgggaaagaactctcctttcccaaattaaatggcacc 15083366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 22579983 - 22579935
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  22579983 actttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 22579935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 24126020 - 24125972
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||||||||||| || || |||||||||||||||||||||||    
T  24126020 actttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 33018215 - 33018167
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  33018215 actttccaatgatgggaaagaactctcctttcccaaattaaatggcacc 33018167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 3542862 - 3542819
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 98  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  3542862 actttcccatggtgggaaaaaactctcctttcccaaattaaatg 3542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 33479744 - 33479701
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 98  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  33479744 actttcccatggtgggaaataactctcctttcccaaattaaatg 33479701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 26227408 - 26227450
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaat 97  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||    
T  26227408 actttcccatggtggaaaagaagtctcatttcccaaattaaat 26227450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 14337557 - 14337606
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| |||||    
T  14337557 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacct 14337606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 9573684 - 9573640
Alignment:
Q  54 gactttcctatggtgggaaagaagtctcctttcccaaattaaatg 98  Q
    ||||||||||| |||| ||||||||||| |||||||| |||||||    
T  9573684 gactttcctatagtggaaaagaagtctcatttcccaagttaaatg 9573640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 24126718 - 24126766
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||| ||||||| || || |||||||||||||||||||||||    
T  24126718 actttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 17227894 - 17227996
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||        ||||||   ||||||||||||||||||||||||||||||||||||||    
T  17227894 tggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaagactttttcatggtgggaaagaagtctcctttcccaaattaaatgcc 17227993  T
Q  101 acc 103  Q
    |||    
T  17227994 acc 17227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 36750437 - 36750488
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacctag 106  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||||    
T  36750437 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacctag 36750488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 17227014 - 17226968
Alignment:
Q  57 tttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  17227014 tttcccatggtgggaaagaaatctcctttcccaaattaaatgccacc 17226968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 42145278 - 42145321
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 98  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||    
T  42145278 actttcctatggtggaaaaaaagtctcctttcccaaattaaatg 42145321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 19132812 - 19132860
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| | ||||||||||||||||||| ||||    
T  19132812 actttcccatggtgggaaagaactttcctttcccaaattaaatggcacc 19132860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 32489994 - 32489946
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  32489994 actttcccatggtggaaaagaattctcctttcccaaattaaatggcacc 32489946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 31556217 - 31556264
Alignment:
Q  56 ctttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  31556217 ctttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 31556264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 98
Target Start/End: Original strand, 32490203 - 32490238
Alignment:
Q  63 atggtgggaaagaagtctcctttcccaaattaaatg 98  Q
    |||||||||||||| |||||||||||||||||||||    
T  32490203 atggtgggaaagaactctcctttcccaaattaaatg 32490238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 43638078 - 43638129
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacctag 106  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| |||||||    
T  43638078 actttcccatgatgggaaagaagtttactttcccaaattaaatggcacctag 43638129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 41755539 - 41755497
Alignment:
Q  63 atggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  41755539 atggtgggaaaaaactctcctttcccaaattaaatgacaccta 41755497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 37105077 - 37105118
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaa 96  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||    
T  37105077 actttcccatggtgggaaaaaagtctcgtttcccaaattaaa 37105118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 44687171 - 44687212
Alignment:
Q  63 atggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| |||||| ||||||||||||||||||||| |||||    
T  44687171 atggtggaaaagaattctcctttcccaaattaaatggcacct 44687212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 49757182 - 49757223
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaa 96  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||    
T  49757182 actttcccatggtaggaaaaaagtctcctttcccaaattaaa 49757223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 19132611 - 19132563
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| || || |||||||| ||||||||||||||||||||| ||||    
T  19132611 actttcccatagtaggaaagaactctcctttcccaaattaaatggcacc 19132563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 38923673 - 38923713
Alignment:
Q  63 atggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||||||||||||| |||| |||||||||||||||| ||||    
T  38923673 atggtgggaaagaactctcatttcccaaattaaatggcacc 38923713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 45242987 - 45243035
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||||||| |||||| ||| ||||||||||||||||| ||||    
T  45242987 actttcccatggtggaaaagaactcttctttcccaaattaaatggcacc 45243035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 35616720 - 35616824
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnn-gactttcctatggtgggaaagaagtctcctttcccaaattaaatgc 99  Q
    ||||||||||||||||||||| |||||||||||||||||||||||         |||||||| |||||||||||||||||||||||||||| ||||||||    
T  35616720 tggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaaagactttcccatggtgggaaagaagtctcctttcccaagttaaatgc 35616819  T
Q  100 cacct 104  Q
    |||||    
T  35616820 cacct 35616824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 48870699 - 48870801
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||        |||||||| ||||||||||| ||||||| |||||||| |||||| ||    
T  48870699 tggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaagactttcccatggtgggaaaaaagtctcatttcccaagttaaattcc 48870798  T
Q  101 acc 103  Q
    |||    
T  48870799 acc 48870801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 51987875 - 51987826
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51987875 actttcccatggtgggaaagaagtctcctttcccaaattaaatgccacct 51987826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 51988464 - 51988512
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  51988464 actttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 51988512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 51974485 - 51974435
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  51974485 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccta 51974435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 8560887 - 8560839
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  8560887 actttcccatgatgggaaagaagtctcctttcccaaattaaatgtcacc 8560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 16270255 - 16270207
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  16270255 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 16270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17494514 - 17494470
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggt 45  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||    
T  17494514 tggatagactataataacaatggtggtactattcaatctaatggt 17494470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 23440865 - 23440913
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  23440865 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 23440913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 48972453 - 48972495
Alignment:
Q  63 atggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    |||||||||||||| ||||||||||||||||||||| ||||||    
T  48972453 atggtgggaaagaactctcctttcccaaattaaatggcaccta 48972495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 35615812 - 35615767
Alignment:
Q  58 ttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||||    
T  35615812 ttcccatggtgggaaagaagtctccttttccaagttaaatgccacc 35615767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 37874113 - 37874064
Alignment:
Q  54 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||| ||||    
T  37874113 gactttcccatggtgggaaagaagtctcatttcccaagttaaatgtcacc 37874064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 43737978 - 43738027
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||| |||||    
T  43737978 actttcccatgatgggaaagaactctcctttcccaaattaaatggcacct 43738027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 193890 - 193850
Alignment:
Q  63 atggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  193890 atggtgggaaagaactctcctttcccaaattaaatggcacc 193850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 9948887 - 9948935
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| |||||||||| |||||||||| ||||    
T  9948887 actttcccatggtgggaaagaactctcctttcctaaattaaatggcacc 9948935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37874907 - 37874951
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggt 45  Q
    |||||||||||||||||||||  |||||||| |||||||||||||    
T  37874907 tggatagactataataacaatgatggtactaatcaatctaatggt 37874951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 48869815 - 48869768
Alignment:
Q  57 tttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||| ||||||| |||||||||||||||||||| ||||||| |||||    
T  48869815 tttcccatggtggaaaagaagtctcctttcccaagttaaatgtcacct 48869768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 1012595 - 1012554
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaa 96  Q
    ||||||| ||||||||||| || |||||||||||||||||||    
T  1012595 actttcccatggtgggaaaaaaatctcctttcccaaattaaa 1012554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 48971742 - 48971705
Alignment:
Q  66 gtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  48971742 gtgggaaagaactctcctttcccaaattaaatgacacc 48971705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 194701 - 194749
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||    
T  194701 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 194749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 43737777 - 43737729
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||||||||||| || ||| ||||||||||||||||| ||||    
T  43737777 actttcccatggtgggaaataactctactttcccaaattaaatggcacc 43737729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 2845 - 2941
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaat 97  Q
    ||||||||||||||||||||| ||||||||||||||||||||||         |||||||| ||||| | |||||||| |||||||||| |||||||    
T  2845 tggatagactataataacaatggtggtactactcaatctaatggataaaaaaagactttcccatggtagaaaagaagtatcctttcccagattaaat 2941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 2964 - 3060
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcccaaattaaat 97  Q
    ||||||||||||||||||||| ||||||||||||||||||||||         |||||||| ||||| | |||||||| |||||||||| |||||||    
T  2964 tggatagactataataacaatggtggtactactcaatctaatggataaaaaaagactttcccatggtagaaaagaagtatcctttcccagattaaat 3060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 5276514 - 5276464
Alignment:
Q  54 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  5276514 gactttcccatggtgggaaagaagtctcctttcccaagttaaatgccacct 5276464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 13134366 - 13134318
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  13134366 actttcctatggtgggaaagaactctcctttcccaaattaaatggcacc 13134318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 42428177 - 42428236
Alignment:
Q  191 ttttcacttttaaagtgcattggaaagtggaaataagtcttcaaaagctaatccaaacac 250  Q
    ||||||| |||||||||||||||||||||||||| || || |||||| ||||||||||||    
T  42428177 ttttcacatttaaagtgcattggaaagtggaaatgaggctccaaaagttaatccaaacac 42428236  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 14573999 - 14574049
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| ||||||    
T  14573999 actttcttatggtgggaaagaactctcctttcccaaattaaatggcaccta 14574049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 21471065 - 21471015
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  21471065 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccta 21471015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 21471954 - 21472002
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  21471954 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 21472002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36475881 - 36475841
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatctaa 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  36475881 tggatagactataataacaatggtggtactactcaatctaa 36475841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 45139738 - 45139690
Alignment:
Q  57 tttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    ||||| ||| ||| |||||||||||||||||||||||||||||||||||    
T  45139738 tttcccatgatggaaaagaagtctcctttcccaaattaaatgccaccta 45139690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 41042588 - 41042541
Alignment:
Q  57 tttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||| ||||||||||||||| |||||||| |||||||||||||||||    
T  41042588 tttcccatggtgggaaagaagcctcctttctcaaattaaatgccacct 41042541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 37548046 - 37547997
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||| |||||    
T  37548046 actttcccatgatgggaaagaactctcctttcccaaattaaatggcacct 37547997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 4479702 - 4479750
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||| ||||    
T  4479702 actttcccatggtgagaaagaactctcctttcccaaattaaatggcacc 4479750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 14573309 - 14573261
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||||||||||| || ||||||||||||||||||||| ||||    
T  14573309 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 14573261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 37157570 - 37157522
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||||||| |||||||||||| | ||||||||||||||||| ||||    
T  37157570 actttcctatgatgggaaagaagtttgctttcccaaattaaatggcacc 37157522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5277341 - 5277380
Alignment:
Q  1 tggatagactataataacaattgtggtactactcaatcta 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  5277341 tggatagactataataacaatggtggtactacttaatcta 5277380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 4478899 - 4478849
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||||    
T  4478899 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcaccta 4478849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 33433159 - 33433201
Alignment:
Q  54 gactttcctatggtgggaaagaagtctcctttcccaaattaaa 96  Q
    |||||||| |||||||||||||| ||||||||| |||||||||    
T  33433159 gactttcccatggtgggaaagaactctcctttctcaaattaaa 33433201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 1164788 - 1164825
Alignment:
Q  67 tgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  1164788 tgggaaagaactctcctttcccaaattaaatggcacct 1164825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 19521917 - 19521966
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| |||||    
T  19521917 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacct 19521966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 43789477 - 43789428
Alignment:
Q  56 ctttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    |||||| |||||||||||||||| ||| ||||||  ||||||||||||||    
T  43789477 ctttcccatggtgggaaagaagtatccattcccaggttaaatgccaccta 43789428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 5278398 - 5278442
Alignment:
Q  57 tttcctatggtgggaaa-gaagtctcctttcccaaattaaatgcc 100  Q
    ||||||||||||||||| |||||||| |||||||| |||||||||    
T  5278398 tttcctatggtgggaaaagaagtctcttttcccaagttaaatgcc 5278442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 38778902 - 38778852
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  38778902 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccta 38778852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 41194561 - 41194511
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  41194561 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccta 41194511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 37468958 - 37468909
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  37468958 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 37468909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 668227 - 668179
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  668227 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 668179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 17145670 - 17145622
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  17145670 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 17145622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 37469005 - 37469053
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  37469005 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37469053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 38779563 - 38779611
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  38779563 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 38779611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 7677809 - 7677852
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 98  Q
    ||||||| |||||||||||||| |||||||||||||||||||||    
T  7677809 actttcccatggtgggaaagaactctcctttcccaaattaaatg 7677852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 15011429 - 15011366
Alignment:
Q  187 acaattttcacttttaaagtgcattggaaagtggaaataagtcttcaaaagctaatccaaacac 250  Q
    ||||||||||| ||||||||||||||  |||| ||||| || || |||||||||||||||||||    
T  15011429 acaattttcacatttaaagtgcattgagaagttgaaatgagcctccaaaagctaatccaaacac 15011366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 4261596 - 4261645
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| |||||||||||||| |||||||||| |||||||||| |||||    
T  4261596 actttcccatggtgggaaagaactctcctttcctaaattaaatggcacct 4261645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 669103 - 669151
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||||||||||||||| || |||| |||||||||||||||| ||||    
T  669103 actttcctatggtgggaaaaaactctcatttcccaaattaaatggcacc 669151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 98
Target Start/End: Complemental strand, 7677457 - 7677422
Alignment:
Q  63 atggtgggaaagaagtctcctttcccaaattaaatg 98  Q
    |||||||||||||| |||||||||||||||||||||    
T  7677457 atggtgggaaagaattctcctttcccaaattaaatg 7677422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 42455083 - 42455040
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 98  Q
    ||||||| ||||| | ||||||||||||||||||||||||||||    
T  42455083 actttcccatggtagaaaagaagtctcctttcccaaattaaatg 42455040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 37864307 - 37864356
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| |||||||||||||| |||  |||||||||||||||| |||||    
T  37864307 actttcccatggtgggaaagaactcttatttcccaaattaaatggcacct 37864356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 45887981 - 45888030
Alignment:
Q  56 ctttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 105  Q
    |||||| ||||||||||| || |  |||||||||||||||||||||||||    
T  45887981 ctttcccatggtgggaaaaaactagcctttcccaaattaaatgccaccta 45888030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 38072291 - 38072339
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||||||| |||||| |||| |||||||||||||||| ||||    
T  38072291 actttcccatggtggaaaagaactctcatttcccaaattaaatggcacc 38072339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 160 - 209
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 104  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  160 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 27269 - 27221
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  27269 actttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 27221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 27575 - 27623
Alignment:
Q  55 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 103  Q
    ||||||| ||||||||||| || |||||||| |||||||||||| ||||    
T  27575 actttcccatggtgggaaaaaactctccttttccaaattaaatggcacc 27623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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