View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_low_8 (Length: 515)
Name: NF19236_low_8
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 54080709 - 54081225
Alignment:
| Q |
1 |
tcgacatattgtattggaacatgtcataaatcatgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatccaaatccaaatatgccacg |
100 |
Q |
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| T |
54080709 |
tcgacatattgtattggaacatgtcataaatcatgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatccaaatccaaatatgccacg |
54080808 |
T |
|
| Q |
101 |
caaatatgatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaaaacaagagcattcagcagctataaatat--ttcaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| |
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| T |
54080809 |
caaatatgatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaaaactagagcattcagcggctataaatatacttcaa |
54080908 |
T |
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| Q |
199 |
aacctcttcagagtatcaacaacaaatacactgcataccctctaaa-----------------taataaatattatactatattgttcgatatccttagt |
281 |
Q |
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| T |
54080909 |
aacctcttcagagtatcaacaacaaatacactgcataccctctaaagtttgttcaattctatataataaatattatactatattgttcgatatccttagt |
54081008 |
T |
|
| Q |
282 |
ttacctttgcttgatttgctacttcaagctgctacattaatggctgcaccttggtcgtgttgtttacttgcactgcttgttttggtgtcgattattgaat |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
54081009 |
ttacctttgcttgatttgctacttcaagctgctacattaatggctgcaccttggtcgtgttgtttacttgcactgcttgttttggtgtcaattattgaat |
54081108 |
T |
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| Q |
382 |
cagaaagcagagtggctaggaaggatttgggtttggaccttggtggattgggaattggacttggtgcaggagttggtttaggaattggaggtggcagtgg |
481 |
Q |
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| T |
54081109 |
cagaaagcagagtggctaggaaggatttgggtttggaccttggtggattgggaattggacttggtgcaggagttggtttaggaattggaggtggcagtgg |
54081208 |
T |
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| Q |
482 |
ctctggagccggagctg |
498 |
Q |
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||||||||||||||||| |
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| T |
54081209 |
ctctggagccggagctg |
54081225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 320 - 496
Target Start/End: Original strand, 54084426 - 54084602
Alignment:
| Q |
320 |
aatggctgcaccttggtcgtgttgtttacttgcactgcttgttttggtgtcgattattgaatcagaaagcagagtggctaggaaggatttgggtttggac |
419 |
Q |
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|||||||||||||||||| |||||||||||||| |||| |||||| |||| |||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
54084426 |
aatggctgcaccttggtcatgttgtttacttgcggtgctcgttttgatgtcagttattgaatcagaaagcagagtagcaaggaaggatttgggtttggac |
54084525 |
T |
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| Q |
420 |
cttggtggattgggaattggacttggtgcaggagttggtttaggaattggaggtggcagtggctctggagccggagc |
496 |
Q |
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| T |
54084526 |
ctcggtgggttgggaattggacttggtgcaggagtaggcttgggaattggaggtggcagtggctctggagccggagc |
54084602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 54084071 - 54084228
Alignment:
| Q |
8 |
attgtattggaacatgtcataaatcatgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatccaaatccaaatatgccacgcaaatat |
107 |
Q |
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|||||||||| ||||| |||||||||||| |||| ||| |||||||| | ||||||||||||||||| | ||||||||| |||||||||||||| ||||| |
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| T |
54084071 |
attgtattggcacatgccataaatcatgccaatgagcaagttcaaggcgtttcaaccacaagtttttatccatccaaattcaaatatgccacgccaatat |
54084170 |
T |
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| Q |
108 |
gatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaa |
165 |
Q |
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||| ||| | ||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
54084171 |
gatctcctctactttctagcctcaaacttaaaataatcattccgcattttcacaccaa |
54084228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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