View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19236_low_9 (Length: 511)
Name: NF19236_low_9
Description: NF19236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19236_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 120 - 495
Target Start/End: Original strand, 33734956 - 33735326
Alignment:
| Q |
120 |
ttataaattggatgttaaagatcattgatcggtcgaaatcaaaagaaaaatggcaaaagtccaaaacacagtctttacactgaagagtgaactctccctt |
219 |
Q |
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| T |
33734956 |
ttataaattggatgttaaaaatcattaatcggtcgaaatcaaaagaaaaatggcaaaagtccaaaacacagtctttacactgaagagtgaactctccctt |
33735055 |
T |
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| Q |
220 |
cgctttcgtcctcctatagaattggccccaccacaagacagtacatgtcacacttacgaatcctatctggtatttttctggacttaaatacaaaaccaca |
319 |
Q |
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| T |
33735056 |
cgctttcgtcctcctatggaattggccccaccacaagacagtacatgtcacacttacgaatcctatctggcatttttctggacttaaatacaaaaccaca |
33735155 |
T |
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| Q |
320 |
cgtgattcaaagaccaaatgtgaactgaaccgtgtgggaactgtgtacatagctggctcttacctgccacgtcaccttcaaaccgtatatataccaactt |
419 |
Q |
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| T |
33735156 |
cgtgattcaaagaccaaatgtgaactgaaccgtgtgggaactgtgtacatagctggctcttacctgccacgtcaccttcaaaccgtatatataccaactt |
33735255 |
T |
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| Q |
420 |
ctaacctctgactttccaaaaacttcaacttcaaagtaaaatcttctaaaccttatacgacaaaactgcaacctgc |
495 |
Q |
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| T |
33735256 |
ctaacctctgactttccaaaaact-----ttcaaagtaaaatcttctaaaccttatacgacaaaactgcaacctgc |
33735326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 33734853 - 33734913
Alignment:
| Q |
16 |
aattaaaatgatacagagttttagaaatgaacagttattaatagattataaatttgatgtc |
76 |
Q |
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| T |
33734853 |
aattaaaatgatacagagttttagaaataaacattaattaacagattataaatttgatgtc |
33734913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 33718300 - 33718349
Alignment:
| Q |
181 |
caaaacacagtctttacactgaagagtgaactctcccttcgctttcgtcc |
230 |
Q |
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| T |
33718300 |
caaaacacagtctttacactgaagagtgaattctcctttctctttcgtcc |
33718349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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