View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19237_high_1 (Length: 818)
Name: NF19237_high_1
Description: NF19237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19237_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Complemental strand, 47257911 - 47257444
Alignment:
| Q |
18 |
aatgcaatgcatgcacaatccaatgattatacaagtcagaatttacattctaataatttctcagatccatccaaattaacacctattctcnnnnnnnngg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
47257911 |
aatgcaatgcatgcacaatccaatgattatacaagtcagaatttacattctaataatatctcagatccatccaaattaacacctattctctttttttttg |
47257812 |
T |
|
| Q |
118 |
gtacaaaattaacacctattctacaaatccaacattaacatagtttgttgaaataattaaaaacaaat---------taacaaaataaacaaccttattt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47257811 |
gtacaaaattaacacctattctacaaatccaacattaacatagtttgttgaaataattaaaaacaaataaaacaaattaacaaaataaacaaccttattt |
47257712 |
T |
|
| Q |
209 |
caaaaccccgaggatcaaacttgaactgcataatctttgaactttgtttgaaatttacctctctaatattttgcccttcttgagtggaaatagtggaggc |
308 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47257711 |
caaaaccctgaggatcaaacttgaactgcataatctttgaactttgtttgaaatttacctctctaatattttgcccttcttgagtggaaatagtggaggc |
47257612 |
T |
|
| Q |
309 |
aaagcactgtttttcatctgtgtacaaattggcacattaatcattggtctaattctaatagtagctgatcttgttctctccaaccctttctttatcctct |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47257611 |
aaagcactgtttttcatctgtgtacaaattggcacattaatcattggtctaattctaatagtagctgatcttgttctctccaaccctttctttatcctct |
47257512 |
T |
|
| Q |
409 |
tcacatgctgattctctttgtttttagaaccttctttagcagctacatcgccgagcgaactcccattc |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47257511 |
tcacatgctgattctctttgtttttagaaccttctttagcagctacatcaccgagcgaactcccattc |
47257444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 520 - 818
Target Start/End: Complemental strand, 47257400 - 47257102
Alignment:
| Q |
520 |
ctctttgtttcttcaaccttagtaactctttccataaaacagtgcactttggtggccttggtgatggatcatcatccacaaaccaatttactctactatt |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47257400 |
ctctttgtttcttcaaccttagtaactctttccataaaacagtgcactttggtggccttggtgatggatcatcatccacaaaccaatttactctactatt |
47257301 |
T |
|
| Q |
620 |
attattatcttctttgttgtccactaccacctcaatcacttcctcctcctcttcttctttgaggttgatcttgttgagtttctctagatgttgcatctgc |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47257300 |
attattatcttctttgttgtccactaccacctcaatcacttcctcctcttcttcttctttgaggttgatcttgttgagtttctctagatgttgcatctgc |
47257201 |
T |
|
| Q |
720 |
caaaagggaaggatttttccttcaaagaaaagttcatcagctgataaaactgtgtttttgtcacttatgttgatgtttgaaagaaactcaaactgatct |
818 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47257200 |
caaaagggaaggatttttccttcaaagaaaagttcatcagctgataaaactgtgtttttgtcacttatgttgatgtttgaaagaaactcaaactgatct |
47257102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University