View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19237_high_3 (Length: 354)

Name: NF19237_high_3
Description: NF19237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19237_high_3
NF19237_high_3
[»] chr7 (5 HSPs)
chr7 (219-354)||(42903136-42903271)
chr7 (14-112)||(4093157-4093255)
chr7 (148-224)||(4093288-4093364)
chr7 (148-219)||(48072286-48072357)
chr7 (150-214)||(20056528-20056592)
[»] chr1 (5 HSPs)
chr1 (8-115)||(41405357-41405464)
chr1 (8-110)||(51679951-51680053)
chr1 (148-214)||(41405264-41405330)
chr1 (148-218)||(51679855-51679925)
chr1 (148-219)||(24764161-24764232)
[»] chr3 (2 HSPs)
chr3 (148-214)||(3267700-3267766)
chr3 (148-214)||(43591523-43591589)
[»] chr8 (1 HSPs)
chr8 (148-214)||(38819656-38819722)
[»] chr5 (1 HSPs)
chr5 (148-214)||(8224403-8224469)
[»] chr4 (2 HSPs)
chr4 (151-214)||(35478207-35478270)
chr4 (169-221)||(41764195-41764247)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 219 - 354
Target Start/End: Original strand, 42903136 - 42903271
Alignment:
Q  219 ttataataatcatcaacttcttttttcaaactacccggtgcaagacttgaatgaatctcgtctttgacacaatttaagttcaaatataagtgagaggata 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42903136 ttataataatcatcaacttcttttttcaaactacccggtgcaagacttgaatgaatctcgtctttgacacaatttaagttcaaatataagtgagaggata 42903235  T
Q  319 catatatataatgtcttaatattataaatttaaatg 354  Q
    ||||||| ||||||||||||||| ||||||||||||    
T  42903236 catatatgtaatgtcttaatattgtaaatttaaatg 42903271  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 4093157 - 4093255
Alignment:
Q  14 gacgacggcggtgatcggtgagagaagttacaacggcggcggtggctggagaaccgacgttgaacatagagaaggatggccgagagagatggggagaga 112  Q
    ||||||| |||||||| |||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||| ||||||||| ||||||    
T  4093157 gacgacgacggtgatcagtgagagaagttacaacgacggcggtggttagagaaccggcgttgaacatagagaaggatggccgggagagatggtgagaga 4093255  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 4093288 - 4093364
Alignment:
Q  148 gatgtataaagctacagtgacatatggtatctgtattgtgtttggatttttgtgttcatctatcattcctgttataa 224  Q
    |||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||||| |||| ||||    
T  4093288 gatgtataaagctacagtgacatatggtgtctgtattgtgtttagttttttgtgttcatttatcatttctgtaataa 4093364  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 48072286 - 48072357
Alignment:
Q  148 gatgtataaagctacagtgacatatggtatctgtattgtgtttggatttttgtgttcatctatcattcctgt 219  Q
    ||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||| | |||||||| ||||    
T  48072286 gatgtataatgctacagtcacatatggtgtctgtattgtgtttggttttttgtgtttaactatcatttctgt 48072357  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 20056528 - 20056592
Alignment:
Q  150 tgtataaagctacagtgacatatggtatctgtattgtgtttggatttttgtgttcatctatcatt 214  Q
    |||||||||||||||    |||| || ||||||||||||||| |||||||| ||||| |||||||    
T  20056528 tgtataaagctacagaactatatagtgtctgtattgtgtttgcatttttgtattcatttatcatt 20056592  T

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Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 41405464 - 41405357
Alignment:
Q  8 agcagagacgacggcggtgatcggtgagagaagttacaacggcggcggtggctggagaaccgacgttgaacatagagaaggatggccgagagagatgggg 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  41405464 agcagtgacgacggcggtgatcggtgagagaagttacaacggcggcggtggctggagaaccggcgttgaacatagagaaggatggccgagagagatggtg 41405365  T
Q  108 agagaagg 115  Q
    ||||||||    
T  41405364 agagaagg 41405357  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 51680053 - 51679951
Alignment:
Q  8 agcagagacgacggcggtgatcggtgagagaagttacaacggcggcggtggctggagaaccgacgttgaacatagagaaggatggccgagagagatgggg 107  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  51680053 agcagtgacgacggcggtgattagtgagagaagttacaacggcggcggtggctggagaaccggcgttgaacatagagaaggatggccgagagagatggtg 51679954  T
Q  108 aga 110  Q
    |||    
T  51679953 aga 51679951  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 41405330 - 41405264
Alignment:
Q  148 gatgtataaagctacagtgacatatggtatctgtattgtgtttggatttttgtgttcatctatcatt 214  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | |||||||||    
T  41405330 gatgtataaagctacagtgatatatggtgtctgtattgtgtttggatttttgtgtacttctatcatt 41405264  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 51679925 - 51679855
Alignment:
Q  148 gatgtataaagctacagtgacatatggtatctgtattgtgtttggatttttgtgttcatctatcattcctg 218  Q
    |||||||||| ||| ||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||    
T  51679925 gatgtataaaactagagtgacatatggcgtctgtattgtgtttggttttttgtgttcatttatcattcctg 51679855  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 24764161 - 24764232
Alignment:
Q  148 gatgtataaagctacagtgacatatggtatctgtattgtgtttggatttttgtgttcatctatcattcctgt 219  Q
    ||||||||| |||||||||| ||||| | |||||||||||||||  ||||||||||||  ||||||||||||    
T  24764161 gatgtataatgctacagtgatatatgatgtctgtattgtgtttgattttttgtgttcacttatcattcctgt 24764232  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 3267700 - 3267766
Alignment:
Q  148 gatgtataaagctacagtgacatatggtatctgtattgtgtttggatttttgtgttcatctatcatt 214  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||  |||||||    
T  3267700 gatgtataaagctacagtgatgtatggtgtctgtattgtgtttggatttttgtgttcacttatcatt 3267766  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 43591523 - 43591589
Alignment:
Q  148 gatgtataaagctacagtgacatatggtatctgtattgtgtttggatttttgtgttcatctatcatt 214  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| |||||||||| ||| |||||||    
T  43591523 gatgtataaagctacagtaccatatggtgtctgtattgtgtttgcatttttgtgtccatttatcatt 43591589  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 38819656 - 38819722
Alignment:
Q  148 gatgtataaagctacagtgacatatggtatctgtattgtgtttggatttttgtgttcatctatcatt 214  Q
    ||||||||||||||||||  |||||||| || |||||||||||| |||||||||| ||| |||||||    
T  38819656 gatgtataaagctacagtaccatatggtgtccgtattgtgtttgcatttttgtgtccatttatcatt 38819722  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 8224469 - 8224403
Alignment:
Q  148 gatgtataaagctacagtgacatatggtatctgtattgtgtttggatttttgtgttcatctatcatt 214  Q
    |||||||||||||| |||  |||||||| ||||||||||||||| |||||||||| ||| |||||||    
T  8224469 gatgtataaagctagagtaccatatggtgtctgtattgtgtttgcatttttgtgtccatttatcatt 8224403  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 35478207 - 35478270
Alignment:
Q  151 gtataaagctacagtgacatatggtatctgtattgtgtttggatttttgtgttcatctatcatt 214  Q
    ||||||| |||||||| |||| | | |||||||||||||||  ||||||||||||| |||||||    
T  35478207 gtataaaactacagtgtcatacgatgtctgtattgtgtttgattttttgtgttcatttatcatt 35478270  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 41764195 - 41764247
Alignment:
Q  169 atatggtatctgtattgtgtttggatttttgtgttcatctatcattcctgtta 221  Q
    ||||||| ||||||||||||||| |  ||||||| ||| ||||||||||||||    
T  41764195 atatggtgtctgtattgtgtttgaaaatttgtgtccatttatcattcctgtta 41764247  T

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