View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19237_high_7 (Length: 237)
Name: NF19237_high_7
Description: NF19237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19237_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 51376182 - 51376024
Alignment:
| Q |
1 |
ttctttatagtttttcttaggttttattggtcttcctctacttctagcaattgggtcatgttgaaatttgtaaaaacaaataccaaatggttacaatggt |
100 |
Q |
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| T |
51376182 |
ttctttatagtttttcttaggttttattggtcttcctctacttctagcaattggatcatgttgaaatttgtaaaaacaaataccaaatggttacaat--- |
51376086 |
T |
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| Q |
101 |
ttggttcttctatctttacttcctcaacc----tatataattgattgtcacagagtatttatat |
160 |
Q |
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| T |
51376085 |
--ggttcttctatctttacttcctcaacctatatatataattgattgtcacagagtatttatat |
51376024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 51861549 - 51861618
Alignment:
| Q |
152 |
tatttatatgattctgaaaagcaagcaaatgaagatgattcatctgaggatcccgtttacaagtgctacg |
221 |
Q |
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| T |
51861549 |
tatttttatgattctgaaaaacaagcaaatgaagatgattcatccgaggatcctatttacaagtgctacg |
51861618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 51821664 - 51821723
Alignment:
| Q |
160 |
tgattctgaaaagcaagcaaatgaagatgattcatctgaggatcccgtttacaagtgcta |
219 |
Q |
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| T |
51821664 |
tgattctaaaaaacaagcaaatgaagatgattcatcagaggatcccatttacaagtgcta |
51821723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 51376023 - 51375983
Alignment:
| Q |
179 |
aatgaagatgattcatctgaggatcccgtttacaagtgcta |
219 |
Q |
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| T |
51376023 |
aatgaagatgattcatctgaggatcccgtttacaagtgcta |
51375983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 51851416 - 51851482
Alignment:
| Q |
152 |
tatttatatgattctgaaaagcaagcaaatgaagatgattcatctgaggatcccgtttacaagtgctacg |
221 |
Q |
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| T |
51851416 |
tatttttatgattctgaaaaacaagcaaatga---tgattcatctgaggatctcatttacaagtgctacg |
51851482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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