View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19237_low_3 (Length: 437)
Name: NF19237_low_3
Description: NF19237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19237_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 200 - 429
Target Start/End: Original strand, 35445583 - 35445811
Alignment:
| Q |
200 |
tctctatacctactttttagtttctacaagttacaaagttgcatgtttttagtccctctttatagaccaaaagcatgtcaatgtcatgtataatttgttg |
299 |
Q |
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| T |
35445583 |
tctctatacctactttttagtttctacaagttacaatgttgcatgtttttagtccctctttatggaccaaaagtatgtcaatgtcatgtataatttgttg |
35445682 |
T |
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| Q |
300 |
ggactgaaaagtgggtatagggagggactgatagtaaaattatagataactatagagattaaaaaacatatttaataactcgggttatgtataagtagat |
399 |
Q |
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| T |
35445683 |
ggactgaaaagtgagtatagggagggactgatagtaaaattatagataactatagagatt-aaaaacatatttaataactcgggttatgtataagtagat |
35445781 |
T |
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| Q |
400 |
tcgtttgattcatgaatatgttagaattat |
429 |
Q |
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| T |
35445782 |
tcgtttgattcatgaatatgttagaattat |
35445811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 35445382 - 35445502
Alignment:
| Q |
15 |
aactgccctatccattaatgctaaaaatgaacaaaacacaactcaaaattagtttgagcattagagactcaattaggcaatttatttgtccagcttggtt |
114 |
Q |
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| T |
35445382 |
aactgccctatccattaatgctaaaaatgaacaaaacacaactcaaaattagtttgagcattagagactcaattaggcaatttatttgtccagcttggtt |
35445481 |
T |
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| Q |
115 |
catgaatcaaatgagcaaaac |
135 |
Q |
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| T |
35445482 |
catgaatcaaatgagcaaaac |
35445502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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