View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19238_high_1 (Length: 585)
Name: NF19238_high_1
Description: NF19238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19238_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 9 - 553
Target Start/End: Complemental strand, 44006316 - 44005776
Alignment:
| Q |
9 |
gacatcatcatcatgttactttagacaggacaattgatcactttcataataacatttggttgtagnnnnnnncaaagaaaaacatccgattactatagac |
108 |
Q |
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| T |
44006316 |
gacataatcatcatgttactttagacaggacaattgatcactttcataataacatttggttgtagtttttttcaaagaaaaacatccgattactatagac |
44006217 |
T |
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| Q |
109 |
annnnnnnnnnnnngaattagcaaaatttattaatcacaggaagctttgagcacaagatgagcaagagcacgcaaaagggaatacaaaagagagaaacaa |
208 |
Q |
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| T |
44006216 |
atatttttttttt-gaattagcaaaatttattaatcacaggaagctttgagcacaagatgagcaagagcacgcaaaagggaatacaaaagagagaaacaa |
44006118 |
T |
|
| Q |
209 |
caagaaaaataacagcagcagctgagctaacacagtaataattactatagacatggcagttgcttaaacaaaataaatctgaattatttgcataatcatg |
308 |
Q |
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| T |
44006117 |
---gaaaaataacagcagcagctgagctaacacagtaataattactatagacatggcagttgcttaaacaaaataaatctgaattatttgcataatcatg |
44006021 |
T |
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| Q |
309 |
ttactttttattctcccgttatagatcaataccaacaaaagtaaagacaatggatatgtaagaacatagccatgcagatgacactaggaattccnnnnnn |
408 |
Q |
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| T |
44006020 |
ttactttttattctcccgttatagatcaatatcaacaaaagtaaagacaatggatatgtaagaacatagccatgcagatgacactaggaattcctttttt |
44005921 |
T |
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| Q |
409 |
ncctcttctggcctctagactttgcataatactaatttaattataaggattacattcttttgatagattttgtccaaacacagcgttggttttgttccat |
508 |
Q |
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| T |
44005920 |
tcctcttctggcctctagactttgcataatactaatttaattataaggattacattcttttgatagattttgtccaaacacagcgttggttttgttccat |
44005821 |
T |
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| Q |
509 |
ctgcctaagagaagttttcatatattcacattactataataatgt |
553 |
Q |
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| T |
44005820 |
ctgcctaagagaagttttcatatattcacattactataataatgt |
44005776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 455 - 547
Target Start/End: Complemental strand, 44009852 - 44009759
Alignment:
| Q |
455 |
ggattacattcttttgatagattttgtcca-aacacagcgttggttttgttccatctgcctaagagaagttttcatatattcacattactataa |
547 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||| || ||||||| | |||||||||| |
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| T |
44009852 |
ggattacattcttttgatagattttgtccacaacacagcattggttttgttccatctacctatgagaagattgtatatattaatattactataa |
44009759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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