View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19238_high_15 (Length: 245)
Name: NF19238_high_15
Description: NF19238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19238_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 2706199 - 2705984
Alignment:
| Q |
19 |
aggacgatagattaagaaataaatctattatgaaattggttagaaattttataaattacaggttaaactcatagttctatattgtggtttcgtcttcata |
118 |
Q |
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| T |
2706199 |
aggacgatagattaagaaataaatctataataaaattggttagaaattttataaattacaggttaaactcctagttctatattgtggtttcgtcttcata |
2706100 |
T |
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| Q |
119 |
ttgtgaaaacgtgaacaaatactgctgatgcggcctcaattgcagttgcaatcgagttgtaaagacttgaaagtttttatgttgcgaccacaattttggt |
218 |
Q |
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| T |
2706099 |
ttgtgaaaacgtgaacaaatactgctgatgcggcctccattgcagttgcaatcgagttgtaaagacttgaaagtttttatgttgcgaccacaattgtggt |
2706000 |
T |
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| Q |
219 |
tgcagacccaatataa |
234 |
Q |
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| T |
2705999 |
tgcagacccaatataa |
2705984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 52 - 208
Target Start/End: Complemental strand, 2697241 - 2697082
Alignment:
| Q |
52 |
aattggttagaaattttataaattacaggttaa---actcatagttctatattgtggtttcgtcttcatattgtgaaaacgtgaacaaatactgctgatg |
148 |
Q |
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|||| ||||||||||||||||| || ||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||||| |
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| T |
2697241 |
aatttgttagaaattttataaaataaaggttaatagactgatagttctaaattgtggtttcgacttcatattgtgaaaacgtgaacaaatgctactgatg |
2697142 |
T |
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| Q |
149 |
cggcctcaattgcagttgcaatcgagttgtaaagacttgaaagtttttatgttgcgacca |
208 |
Q |
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| T |
2697141 |
tagcctcaattgctgtagcgatcaatttttaaaggtttcaaagtatttatgttgcaacca |
2697082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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