View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19238_high_2 (Length: 567)
Name: NF19238_high_2
Description: NF19238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19238_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Original strand, 44006287 - 44006837
Alignment:
| Q |
1 |
tcctgtctaaagtaacatgatgattatgtcattacggaaaaaattatttaaccaataaccatgtttatagtagccaattatcaatcaagaaaaagtaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006287 |
tcctgtctaaagtaacatgatgattatgtcattacggaaaaaattatttaaccaataaccatgtttatagtagccaattatcaatcaagaaaaagtaatc |
44006386 |
T |
|
| Q |
101 |
aattgatgtgtgataactcttcattagtaaaa--gtttttcggcatcttttagtgtcatctgcgtatttatttgttattagtattaccgatttaggnnnn |
198 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006387 |
aattgatgtgtgataactcttcattagtaaaaaagtttttcggcatcttttagtgtcatctgcgtatttatttgttattagtattaccgatttaggtttt |
44006486 |
T |
|
| Q |
199 |
nnnnnnnngacattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgag |
298 |
Q |
| |
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| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006487 |
ttttttttggcattcatcaaagtagtattaatatatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctag-------- |
44006578 |
T |
|
| Q |
299 |
caacattgttggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatcccctctgttcta |
398 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006579 |
caacattgttggtttgtctccgaataaaacctctccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatcccctctgttcta |
44006678 |
T |
|
| Q |
399 |
tgactaggtcttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataagccacattaaagcttgct |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006679 |
tgactaggtcttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataagccacattaaagcttgct |
44006778 |
T |
|
| Q |
499 |
ttaaacccatgctaccacctctcgaggactcggtttactaacgttccacacaggttctg |
557 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006779 |
ttaaacccatgctaccacctctcgaggactcggtttactaacgttccacacaggttctg |
44006837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 209 - 481
Target Start/End: Complemental strand, 24152715 - 24152445
Alignment:
| Q |
209 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
308 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||| ||| ||| |||||| |
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| T |
24152715 |
cattcatcaaagtagtagtaatacatggaggaatataatcaaagacttggcaactagcataagacaatgc--gactagctagaaggtgaacaatattgtt |
24152618 |
T |
|
| Q |
309 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatccc-ctctgttctatgactaggt |
407 |
Q |
| |
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||||| ||||||| ||||| ||||| |||||||||||||||||| || | ||| | ||||| ||||| ||||| ||| || |||| ||||||| ||| |
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| T |
24152617 |
tgtttgtctccgaagaaaacttatccgaaagtttggtaaagaatataaaaatgttttgcaagcacataaaatactaccccactatgttgtatgacttggt |
24152518 |
T |
|
| Q |
408 |
cttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag |
481 |
Q |
| |
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| T |
24152517 |
c-tcccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataag |
24152445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 209 - 506
Target Start/End: Complemental strand, 24147276 - 24146980
Alignment:
| Q |
209 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
308 |
Q |
| |
|
|||| |||||||||||| |||| ||||||| ||||| ||| | ||||||||||||||| || |||| || | ||||||||||| |||||||||||||| |
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| T |
24147276 |
cattaatcaaagtagtagtaatacatggaggtatataatcagagacttggcaactagcacaagacaacgc--cactagctagaaggtgagcaacattgtt |
24147179 |
T |
|
| Q |
309 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatccc-ctctgttctatgactaggt |
407 |
Q |
| |
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||||| ||||||| ||||| ||||| ||||||||||||||||| || | ||| | ||||| ||||| ||||| ||| || |||| ||||||| ||| |
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| T |
24147178 |
tgtttgtctccgaagaaaacttatccgtaagtttggtaaagaatataaaaatgttttgcaagcacataaaatactaccccactttgttgtatgacttggt |
24147079 |
T |
|
| Q |
408 |
cttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag-ccacattaaagcttgctttaaaccc |
506 |
Q |
| |
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| |||||||||||| || | || ||||||||||||||||||||| || ||||| |||||| || ||||||||| |||| || ||||||||||| |||| |
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| T |
24147078 |
c-tcccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataagaacacagtagagcttgctttagaccc |
24146980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 361
Target Start/End: Complemental strand, 43228140 - 43227988
Alignment:
| Q |
209 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
308 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||||||| |||||||||| || ||| | || |||||| |||| |||||||| |||| ||| || |
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| T |
43228140 |
cattcatcaaggtagtaataatatatggaggaatataatcaaaaacttaagaaatagtacaagacaatgtcatactagatagaagatatgcaatattatt |
43228041 |
T |
|
| Q |
309 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattg |
361 |
Q |
| |
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||||| ||||| ||||| ||||| ||||||||||| |||||||||||||| |
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| T |
43228040 |
ggtttatctccgtgtaaaatttatccgaaagtttggtatagaatacaagattg |
43227988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 35379011 - 35379060
Alignment:
| Q |
302 |
cattgttggtttgcctccgaataaaacctatccaaaagtttggtaaagaa |
351 |
Q |
| |
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||||||||| || ||| ||||||||||||| || |||||||||||||||| |
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|
| T |
35379011 |
cattgttggcttaccttcgaataaaacctaacctaaagtttggtaaagaa |
35379060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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