View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19238_high_5 (Length: 434)
Name: NF19238_high_5
Description: NF19238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19238_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 36360186 - 36360602
Alignment:
| Q |
1 |
atctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgccctgacgaacatactacttcccaagccttcttgaatgcctgaat |
100 |
Q |
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| T |
36360186 |
atctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgccctgacgaacatactacttcccaagccttcttgaatgcctgaat |
36360285 |
T |
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| Q |
101 |
attattatatgtccaattataggaaaatttaagttannnnnnnagaaaatcatttgatgttaatagaaaaccaaattagtatcgcatgggcatacaaaat |
200 |
Q |
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| T |
36360286 |
attattatatgtccaattataggaaaatttaagttatttttttagaaaatcatt-gatgttaatagaaaaccaaattagtatcgtatgggcatacaaaat |
36360384 |
T |
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| Q |
201 |
attaaatatgaaatttatcaatagttcgtatatattatgatttttaagctacatattaagagtttattatacctgtgtgtcatccgtatgaccatcccct |
300 |
Q |
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| T |
36360385 |
attaaatatgaaatttatcaatagttcgtatatattttgatttttaagctatatattaagagtttattatacctgtgtgtcatccgtatgaccatcccct |
36360484 |
T |
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| Q |
301 |
ttagctccataatctctaacattaacaattttaagtgaacgtgaagagacaccaaattggtctaagcacaaaacatcatttgtgttttgctctatcatgt |
400 |
Q |
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| T |
36360485 |
ttagctccataatctctaacattaacaattttaagtgaacgtgaagagacaccaaattggtctaagcacaaaacatcatttgtgttttgctctatcatgt |
36360584 |
T |
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| Q |
401 |
tcttgaataataatgtat |
418 |
Q |
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| T |
36360585 |
tcttgaataataatgtat |
36360602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 36348922 - 36349031
Alignment:
| Q |
1 |
atctgattggtttgagtagataattataatcttgaggtgccactaaaactgattgccct------gacgaacatactacttcccaagccttcttgaatgc |
94 |
Q |
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| T |
36348922 |
atctgattggtttgagtagataaatattatcttgaggtgcaacaaaaactgcttcccctcctcctgaagaacatactgcttcccaagccttctcgaatgc |
36349021 |
T |
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| Q |
95 |
ctgaatatta |
104 |
Q |
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|||||||||| |
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| T |
36349022 |
ctgaatatta |
36349031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 36349119 - 36349196
Alignment:
| Q |
268 |
tatacctgtgtgtcatccgtatgaccatcccctttagctccataatctctaacattaacaattttaagtgaacgtgaa |
345 |
Q |
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| T |
36349119 |
tatacctgtgtgtcatcagttttaccatcccctttagctccataatcactgacattaaaaatttgaagtgaacttgaa |
36349196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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