View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19238_low_10 (Length: 278)
Name: NF19238_low_10
Description: NF19238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19238_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 47100880 - 47100602
Alignment:
| Q |
1 |
ctggcatatagagtccttggagcggattatagtttttgtgtggcaaataactaataatgggttgcttactaactctagaatggctaagtggagtttgagt |
100 |
Q |
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| T |
47100880 |
ctggcatatagagtccttggagcggattatagtttttgtgtggcaaataactaataatgggttgcttactaactctagaatggctaagtggagtttgagc |
47100781 |
T |
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| Q |
101 |
gatccttattgcaatcgttgtagtttttgggaagaaacag-ttattcatgtcctaagagaccaccctcttgcatcaaatgtctggcagcatctcataaag |
199 |
Q |
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|||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47100780 |
gatccttagtgcaatcattgtagtttttgggaagaaacaaattattcatgtcctaagagaccaccctcttgcatcaaatgtctggcagcatctcataaag |
47100681 |
T |
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| Q |
200 |
gtcaaccgtcgtggaggaattttcattggtgatttgaaaaattggatagagtttaatatgaatcataatattggacaat |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47100680 |
gtcaaccgtcgtggaggaattttcattggtgatttgaaaaattggatagagtttaatatgaatcataatattggacaat |
47100602 |
T |
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