View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19238_low_12 (Length: 267)
Name: NF19238_low_12
Description: NF19238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19238_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 25951823 - 25952081
Alignment:
| Q |
1 |
acattcccgagtatcttctcctcggaaactcaaaaacacatcccaacgtaatctgaatgctcctccgcctgaagaagatgatggcatcatcatggttggt |
100 |
Q |
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| T |
25951823 |
acattcgcgagtatcttctcctcggaaactcaaaaacacatcccaacgtaatctgaatgctcctccgcctgaagaagatgatgacatcgtcatggttggt |
25951922 |
T |
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| Q |
101 |
ttctgttaattactacttctacttttgtgattatgattttggtttcttaagagaagtaatctaatattacgtgaaattggatttactttacttttgtaaa |
200 |
Q |
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| T |
25951923 |
ttctgttaattactacttctacttttgtgattatgattttggtttcttaagagaagtaatctaatattacgtgaaattggatttactttacttttgtaaa |
25952022 |
T |
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| Q |
201 |
ttggttggttgactcaaagtataagtttgtttcttgaattgcactgtaactagaataat |
259 |
Q |
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| T |
25952023 |
ttggttggttgactcaaagtataagtttgtttcttgaattgcactgtaactataataat |
25952081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 25961074 - 25961136
Alignment:
| Q |
1 |
acattcccgagtatcttctcctcggaaactcaaaaacacatcccaacgtaatctgaatgctcc |
63 |
Q |
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| T |
25961074 |
acattcgcgagtatcttctcctcggaaactcaaaaacacatcccaacgtaacctgaatgctcc |
25961136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 25962329 - 25962409
Alignment:
| Q |
21 |
ctcggaaactcaaaaacacatcccaacgtaatctgaatgctcctccgcctgaagaagatgatggcatcatcatggttggtttct |
104 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| ||| ||||||||||||||| |
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| T |
25962329 |
ctcggaaactcaaaaacacatcccaacgtagcctgaatg---atccacctgaagaagatgatgacattgtcatggttggtttct |
25962409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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