View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19238_low_13 (Length: 253)
Name: NF19238_low_13
Description: NF19238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19238_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 23344751 - 23344988
Alignment:
| Q |
1 |
ttttttctcttgtgccctcttttttctcatgtgtgtcctccagtaattcttaatctcattgtctgttcttccaggtagttttctagcaattcttgaccat |
100 |
Q |
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| T |
23344751 |
ttttttctcttgtgccctcttttttctcatgtgtgtcctccagtaattcttaatctcattgtctgttcttccaggtagttttctagcaattcttgaccat |
23344850 |
T |
|
| Q |
101 |
ctgcaatcatcacacatagctacgtctatgaaacttgagtaaccatagaaattcaaaaccaaatctattcaagaactttcataaaaatacataaggaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
23344851 |
ctgcaatcatcacacatagctacgtctatgaaacttgagtaaccatagaaattcaaaaccaaatctattcaataattttcataaaaatacataaggaaaa |
23344950 |
T |
|
| Q |
201 |
gtatgcgacgccaaactaagaccagacaccgcaatttt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
23344951 |
gtatgcgacgccaaactaagaccagacaccgcaatttt |
23344988 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 41174637 - 41174716
Alignment:
| Q |
26 |
ctcatgtgtgtcctccagtaattcttaatctcattgtctgttcttccaggtagttttctagcaattcttgaccatctgca |
105 |
Q |
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| T |
41174637 |
ctcatgtgagttctccagtaattcttgatctcattatccgttcgtccaggtagcttgcgagcaattcgtgaccacctgca |
41174716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 33695886 - 33695822
Alignment:
| Q |
39 |
tccagtaattcttaatctcattgtctgttcttccaggtagttttctagcaattcttgaccatctg |
103 |
Q |
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| T |
33695886 |
tccagaaattctttatctcattatctgttcttccaggtagatgtgtagcaattgctgaccatctg |
33695822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 17118243 - 17118307
Alignment:
| Q |
35 |
gtcctccagtaattcttaatctcattgtctgttcttccaggtagttttctagcaattcttgacca |
99 |
Q |
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| T |
17118243 |
gtcctccagtaattctttatttcattgtctgttcttcctggtaaacttcttgcaattgttgacca |
17118307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 45594298 - 45594331
Alignment:
| Q |
47 |
ttcttaatctcattgtctgttcttccaggtagtt |
80 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
45594298 |
ttcttaatctcattgtctgttcttcctggtagtt |
45594331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 2790887 - 2790927
Alignment:
| Q |
39 |
tccagtaattcttaatctcattgtctgttcttccaggtagt |
79 |
Q |
| |
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||||||||||||| | |||||||||||||||||||||||| |
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| T |
2790887 |
tccagtaattcttgacatcattgtctgttcttccaggtagt |
2790927 |
T |
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