View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19238_low_18 (Length: 201)
Name: NF19238_low_18
Description: NF19238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19238_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 173
Target Start/End: Original strand, 27498290 - 27498453
Alignment:
| Q |
10 |
catcatcagaggtcaagttaaggccagcatctttgccccatttcacatattgtgcttttccaccatatgcctcccaattgttggccaatgataatatcag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27498290 |
catcatcagaggtcaagttaaggccagcatctttgccccatttcacatattgtgcttttccaccatatgcctcccaattgttggccaatgataatatcag |
27498389 |
T |
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| Q |
110 |
cctgattttgtatttctttgcttcacttaccacaaagtccaaggcctgcagatcaatcataacc |
173 |
Q |
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| T |
27498390 |
cctgattttgtatttctttgcttcacttaccacaaagtccaaggcctgtagatcaatcataacc |
27498453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 27519762 - 27519917
Alignment:
| Q |
10 |
catcatcagaggtcaagttaaggccagcatctttgccccatttcacatattgtgcttttccaccatatgcctcccaattgttggccaatgataatatcag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27519762 |
catcatcagaggtcaagttaaggccagcatctttgccccatttcacatattgtgattttccaccatatgactcccaattgttggccaatgataatatcag |
27519861 |
T |
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| Q |
110 |
cctgattttgtatttctttgcttcacttaccacaaagtccaaggcctgcagatcaa |
165 |
Q |
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| T |
27519862 |
cctgattttgtatttctttgcttcacttaccacaaagtccaaggcctgtagatcaa |
27519917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 281506 - 281366
Alignment:
| Q |
10 |
catcatcagaggtcaagttaaggccagcatctttgccccatttcacatattgtgcttttccaccatatgcctcccaattgttggccaatgataatatcag |
109 |
Q |
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| T |
281506 |
catcatcagaggtcaagttaaggccagcagcattaccccacttgacatattgtgcttttccaccatatgcctcccaattgttaaccaatgataatatgag |
281407 |
T |
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| Q |
110 |
cctgattttgtatttctttgcttcacttaccacaaagtcca |
150 |
Q |
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|||||| ||||||||||||||||||| |||||||| |||| |
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| T |
281406 |
tctgattctgtatttctttgcttcactcaccacaaaatcca |
281366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 634346 - 634486
Alignment:
| Q |
10 |
catcatcagaggtcaagttaaggccagcatctttgccccatttcacatattgtgcttttccaccatatgcctcccaattgttggccaatgataatatcag |
109 |
Q |
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|
||||||||||||||||||||||||||||| | || ||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
634346 |
catcatcagaggtcaagttaaggccagcagcattaccccacttgacatattgtgcttttccaccatatgcctcccaattgttaaccaatgataatatgag |
634445 |
T |
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| Q |
110 |
cctgattttgtatttctttgcttcacttaccacaaagtcca |
150 |
Q |
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|||||| ||||||||||||||||||| |||||||| |||| |
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| T |
634446 |
tctgattctgtatttctttgcttcactcaccacaaaatcca |
634486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 820149 - 820289
Alignment:
| Q |
10 |
catcatcagaggtcaagttaaggccagcatctttgccccatttcacatattgtgcttttccaccatatgcctcccaattgttggccaatgataatatcag |
109 |
Q |
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||||||||||||||||||||||||||||| | || ||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
820149 |
catcatcagaggtcaagttaaggccagcagcattaccccacttgacatattgtgcttttccaccatatgcctcccaattgttaaccaatgataatatgag |
820248 |
T |
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| Q |
110 |
cctgattttgtatttctttgcttcacttaccacaaagtcca |
150 |
Q |
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|||||| ||||||||||||||||||| |||||||| |||| |
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| T |
820249 |
tctgattctgtatttctttgcttcactcaccacaaaatcca |
820289 |
T |
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