View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19238_low_3 (Length: 514)
Name: NF19238_low_3
Description: NF19238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19238_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 16 - 498
Target Start/End: Complemental strand, 35687903 - 35687422
Alignment:
| Q |
16 |
atacgttgttttactaccaaccatcttaagttacaagcagattaaataattttatgctcaggtaattagaatacaaaaaatcacataaatgaaacagaat |
115 |
Q |
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| T |
35687903 |
ataccttgttttactaccaaccatcttaagttacaagcagattaaataattttatgctcaggtaattagaatacaaaaa-tcacataaatgaaacagaat |
35687805 |
T |
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| Q |
116 |
gaccagtggattttcttttacaactagatgttcatattagaattatattgaacctataaaagtgtgtaccgtgagagtcgttcaagtagattttgatcag |
215 |
Q |
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| T |
35687804 |
gaccagtggattttcttttacaactagatgttcatattagaattatattgaacctatgaaagtgtgtaccgtgagagtcgttcaagtagattttgatcag |
35687705 |
T |
|
| Q |
216 |
aacacttcaaagcacgatcatatacaatttcggttcttttggcaacatcatgccagctatagagttccctcatctacagaaaataaacagactgactaag |
315 |
Q |
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| T |
35687704 |
aacacttcaaagcacgatcatatacaatttcggttcttttggcaacatcatgccagctatagagttccctcatctacagaaaataaacagactgactaag |
35687605 |
T |
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| Q |
316 |
taactagtttacctgatgaaagcaaaagaaaagggtcaattaaactataaactcactcgattgtgcatgacttgaggatcaattttaggcagcatagtta |
415 |
Q |
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| T |
35687604 |
taactagtttacctgatgaaagcaaaagaaaagggtcaattaaactataaactcactcgattgtgcatgacttgaggatcaattttaggcagcatagtta |
35687505 |
T |
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| Q |
416 |
tcgccttctggattgcgcgcaccatatcacttggatcaggttctgccaaaacaatcatatcatctggtacaacctatagtaag |
498 |
Q |
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| T |
35687504 |
tcgccttctggattgcgcgcaccatatcacttggatcaggttctgccaaaacaatcatatcatctggtacaacctatagtaag |
35687422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 182 - 298
Target Start/End: Original strand, 40670406 - 40670522
Alignment:
| Q |
182 |
taccgtgagagtcgttcaagtagattttgatcagaacacttcaaagcacgatcatatacaatttcggttcttttggcaacatcatgccagctatagagtt |
281 |
Q |
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||||||||||| || || |||||||||||||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| | |||| |||||| | |
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| T |
40670406 |
taccgtgagagacgctctagtagattttgatcggaacacttcaaagcacggtcatacacaatttcagtccttttggcaacatcgttccagtcatagagct |
40670505 |
T |
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| Q |
282 |
ccctcatctacagaaaa |
298 |
Q |
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| T |
40670506 |
ccctcacctacagaaaa |
40670522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 364 - 493
Target Start/End: Original strand, 40670778 - 40670907
Alignment:
| Q |
364 |
aaactcactcgattgtgcatgacttgaggatcaattttaggcagcatagttatcgccttctggattgcgcgcaccatatcacttggatcaggttctgcca |
463 |
Q |
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||||| |||||||| ||||| ||||| ||||||||||| ||||||||| ||| ||||| | ||||| |||||||||||| |||||||||||||||| |
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| T |
40670778 |
aaacttactcgattatgcataacttgtggatcaatttttggcagcatatgtatggccttttctattgcatacaccatatcactgggatcaggttctgcca |
40670877 |
T |
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| Q |
464 |
aaacaatcatatcatctggtacaacctata |
493 |
Q |
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|||||| ||| |||||||| | |||||||| |
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| T |
40670878 |
aaacaaccatgtcatctggcaaaacctata |
40670907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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