View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19238_low_4 (Length: 458)
Name: NF19238_low_4
Description: NF19238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19238_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 42004554 - 42004125
Alignment:
| Q |
19 |
cttttgtttgtcttctacaccagattcttgaaaatcttccttggttagaagaatggctacttaatagtcaggatgactgtgaagagatggataacattga |
118 |
Q |
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| T |
42004554 |
cttttgtttgtcttctacaccagattcttgaaaatcttccttggttagaagaatggctacttaatagtgaggatgactgtgaagagatggataacattga |
42004455 |
T |
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| Q |
119 |
cctgccgctgaatctattggattcatagcaacttcccgaaacattttcttggttcgaagatttcattcaaagccagtctccgaaaagacacagggaaaat |
218 |
Q |
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| T |
42004454 |
cctgccgctgaatctattggattcacagcaacttcccgaaacattttcttggttcgaagatttcattcaaagccagtctccgaaaagacacagggaaaat |
42004355 |
T |
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| Q |
219 |
gacgaacaaaagaaccagcctagtctttcggcatatgctcatctaggaccagagcagttgaagaaagacaaggaagagtgccaaaatcttgaccacactg |
318 |
Q |
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| T |
42004354 |
gacgaacaaaagaaccagcctagtctttcggcatatgctcatctaggaccagagcagttgaagaaagacaaggaagagtgccaaaatcttgaccacactg |
42004255 |
T |
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| Q |
319 |
gcaatgtacagcttgactcagaatcttccgacattcgattaagtcaacaggtactttcctatgctctcaatgatcttccattacgttaaattcattttag |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
42004254 |
gcaatgtacagcttgactcagaatcttccgacattcgattaagtcaacaggtactttcctatgctctcaatgatcttccattatgttaaactcattttag |
42004155 |
T |
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| Q |
419 |
ttttgtcacacaaaatttttactatctgtg |
448 |
Q |
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| T |
42004154 |
ttttgtcacacaaaatttttactatctgtg |
42004125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 108 - 310
Target Start/End: Complemental strand, 42013304 - 42013102
Alignment:
| Q |
108 |
gataacattgacctgccgctgaatctattggattcatagcaacttcccgaaacattttcttggttcgaagatttcattcaaagccagtctccgaaaagac |
207 |
Q |
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|||||| |||||||| ||| |||| ||||||||||| |||||||| | ||| | |||| | ||||| ||||||| |||| ||||||||||||||||| |
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| T |
42013304 |
gataactttgacctgtcgcagaatttattggattcacagcaacttgcggaaggactttccttgttcgcagatttctttcagagccagtctccgaaaaggg |
42013205 |
T |
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| Q |
208 |
acagggaaaatgacgaacaaaagaaccagcctagtctttcggcatatgctcatctaggaccagagcagttgaagaaagacaaggaagagtgccaaaatct |
307 |
Q |
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| T |
42013204 |
atggggaaagcggagagcaaatggaacgacctagtctttccgtatatgctcatttaggagcagagcaattgaagaaagatattgaagagtgtcaaaatct |
42013105 |
T |
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| Q |
308 |
tga |
310 |
Q |
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||| |
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| T |
42013104 |
tga |
42013102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 321 - 417
Target Start/End: Complemental strand, 42013016 - 42012922
Alignment:
| Q |
321 |
aatgtacagcttgactcagaatcttccgacattcgattaagtcaacaggtactttcctatgctctcaatgatcttccattacgttaaattcatttta |
417 |
Q |
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|||||| ||||||||||| || ||||||| |||||||||||||||| |||| ||||||| ||||||||| |||||| ||| |||||||||||||| |
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| T |
42013016 |
aatgtagagcttgactcacaaccttccgatattcgattaagtcaactggta--ttcctattttctcaatgaccttccaatacattaaattcatttta |
42012922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 42013558 - 42013476
Alignment:
| Q |
19 |
cttttgtttgtcttctacaccagattcttgaaaatcttccttggttagaagaatggctacttaatagtcaggatgactgtgaagag |
104 |
Q |
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||||||||||||||||| | |||||||| ||||||| || |||||||| ||||||||| | ||||||||||| ||||||||| |
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| T |
42013558 |
cttttgtttgtcttctataacagattctaccaaatctttctcggttagaa---tggctacttgaaagtcaggatgattgtgaagag |
42013476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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