View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19238_low_6 (Length: 365)
Name: NF19238_low_6
Description: NF19238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19238_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 64 - 239
Target Start/End: Original strand, 38917652 - 38917833
Alignment:
| Q |
64 |
atgattcgatgaaaagaaatgaaaacggaagctaaaacgattaccatcaaaaagcatcatcc------taaattaagcttgatcatttaaaagattgtga |
157 |
Q |
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| T |
38917652 |
atgattcgatgaaaagaaatgaaaacggaagctaaaacgattaccatcaaaaagcatcatcctaatcctaaattaagcttgatcatttaaaagattgtga |
38917751 |
T |
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| Q |
158 |
aaaccacaaacatattagcttggaatgtgttggttgataaatgatttggctagttttattctacttaacatatgttaaagag |
239 |
Q |
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| T |
38917752 |
aaaccacaatcatattagcttggaatgtgttggttgataaatgatttggctagttttattctacttaacatatgttaaagag |
38917833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 38917459 - 38917512
Alignment:
| Q |
10 |
aagaatattataagaagataaacaatcttaaaaattgtgttgtcgcattagcac |
63 |
Q |
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| T |
38917459 |
aagaatattataagaagataaacaatcttaaaaattgtgttgtcgcattagcac |
38917512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 238 - 350
Target Start/End: Complemental strand, 35241175 - 35241063
Alignment:
| Q |
238 |
aggggaatggattgtctccagtccaattttctcctgttttctcctgtgaagcaatttgagccgtccatttcttttaatgatagatcaatggctaaaaaca |
337 |
Q |
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| T |
35241175 |
aggggaatggattgtctccagtccaattttctcctgttttctcctgtgaagcaatctgagccctccatttctttgaatgatagatcaacggctaaaaaca |
35241076 |
T |
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| Q |
338 |
agaacaattaatt |
350 |
Q |
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||||||| ||||| |
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| T |
35241075 |
agaacaaataatt |
35241063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 35240358 - 35240430
Alignment:
| Q |
240 |
gggaatggattgtctccagtccaattttctcctgttttctcctgtgaagcaatttgagccgtccatttctttt |
312 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
35240358 |
gggaaaggattgtctccagtcaaattttctcctgttttctcctgtgaagcaatctgagccttccatttctttt |
35240430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 31121265 - 31121210
Alignment:
| Q |
262 |
aattttctcctgttttctcctgtgaagcaatttgagccgtccatttcttttaatga |
317 |
Q |
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| T |
31121265 |
aatttcctccagttttctcctgtgaatcaatcttagccgtccatttcttttaatga |
31121210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 14112594 - 14112521
Alignment:
| Q |
240 |
gggaatggattgtctccagtccaattttctcctgttttctcctgtgaagcaatttgagccgtccatttctttta |
313 |
Q |
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| T |
14112594 |
gggaatggattgtctccagtccaattttctcatgttttctcctgtgaagcaatctgagccctccatttctttta |
14112521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 330
Target Start/End: Original strand, 1961987 - 1962077
Alignment:
| Q |
240 |
gggaatggattgtctccagtccaattttctcctgttttctcctgtgaagcaatttgagccgtccatttcttttaatgatagatcaatggct |
330 |
Q |
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||||||||||||||||||||| || ||||||| ||||||||||||| |||||| |||| |||||| ||||||||| ||||||| |||| |
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| T |
1961987 |
gggaatggattgtctccagtcaaaatttctccagttttctcctgtggagcaatcatagccctccattccttttaatggcagatcaacggct |
1962077 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 330
Target Start/End: Complemental strand, 1962649 - 1962559
Alignment:
| Q |
240 |
gggaatggattgtctccagtccaattttctcctgttttctcctgtgaagcaatttgagccgtccatttcttttaatgatagatcaatggct |
330 |
Q |
| |
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||||||||||||||||||||| || ||||||||||||||||||||| |||||| |||| | |||| ||||||||| ||||||| |||| |
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| T |
1962649 |
gggaatggattgtctccagtcaaaatttctcctgttttctcctgtggagcaatcacagcccttcattccttttaatggaagatcaacggct |
1962559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 25506234 - 25506289
Alignment:
| Q |
262 |
aattttctcctgttttctcctgtgaagcaatttgagccgtccatttcttttaatga |
317 |
Q |
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||||| |||| ||||||||||||||| |||| | |||||||||||||||||||||| |
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| T |
25506234 |
aatttcctccagttttctcctgtgaatcaatcttagccgtccatttcttttaatga |
25506289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 44087921 - 44087962
Alignment:
| Q |
239 |
ggggaatggattgtctccagtccaattttctcctgttttctc |
280 |
Q |
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| T |
44087921 |
ggggaatggattgtctccagtccaatttcctcctgttttctc |
44087962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 40396917 - 40396862
Alignment:
| Q |
262 |
aattttctcctgttttctcctgtgaagcaatttgagccgtccatttcttttaatga |
317 |
Q |
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|||||||||||||||||||||||||| ||| | |||| |||||| |||||||||| |
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| T |
40396917 |
aattttctcctgttttctcctgtgaaataatcttagccatccattccttttaatga |
40396862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 36071999 - 36071944
Alignment:
| Q |
262 |
aattttctcctgttttctcctgtgaagcaatttgagccgtccatttcttttaatga |
317 |
Q |
| |
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||||| |||| |||||||| |||||||||||||||||| |||||| ||||||||| |
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| T |
36071999 |
aatttcctccagttttctcgtgtgaagcaatttgagccctccattctttttaatga |
36071944 |
T |
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