View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19238_low_7 (Length: 360)
Name: NF19238_low_7
Description: NF19238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19238_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 31438169 - 31438497
Alignment:
| Q |
16 |
atccgaaacttcctatggagaatagtcaagaatattctgtcggtccgtgttaatttaaggaaaaaaggaatcaatttggacttgaaatgcccaatctgtc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31438169 |
atccgaaacttcctatggagaatagtcaagaatatcctgccggtccgtgtcaatttaaggaaaaaaggaatcaatttggacttgaaatgcccaatctgtc |
31438268 |
T |
|
| Q |
116 |
aattaca-gatgaagatgttgagcacctattcatgcattgtcattcgacaaaagcgacatggttttgcagttccatgggaattcacatacccccatctat |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31438269 |
aattacatgatgaagatgttgagcacctattcatgcattgtcagtcgacaaaagcgacatggttttgcagttgcatgggaattcacatacccccatctat |
31438368 |
T |
|
| Q |
215 |
gaaccttggtgactggttgttacattggctttcttgtggtaatgtatttgcctcacaactcttctgttcattgctttggaaagtgtgggatgcaaggaat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31438369 |
gaaccttggtgactggttgttacattggctttcttgtggtaatgtatttgcctcacaactcttctgttcattgctttggaaagtgtgggatgcaaggaat |
31438468 |
T |
|
| Q |
315 |
aagcttatttttgaagatcggaagttcat |
343 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31438469 |
aagcttatttttgaagatcggaagttcat |
31438497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 171 - 325
Target Start/End: Original strand, 31193277 - 31193431
Alignment:
| Q |
171 |
acatggttttgcagttccatgggaattcacatacccccatctatgaaccttggtgactggttgttacattggctttcttgtggtaatgtatttgcctcac |
270 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
31193277 |
acatggttttgcagttctatgggaattcacattcccccatctatgaaccttggtgattggttgttacattggctttcttgtggtaatgtctttacctcac |
31193376 |
T |
|
| Q |
271 |
aactcttctgttcattgctttggaaagtgtgggatgcaaggaataagcttatttt |
325 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31193377 |
aactcttctgttcattgctttggaaagtttgggatgcaaggaataagcttatttt |
31193431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 31193178 - 31193273
Alignment:
| Q |
21 |
aaacttcctatggagaatagtcaagaatattctgtcggtccgtgttaatttaaggaaaaaaggaatcaatttggacttgaaatgcccaatctgtca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | || ||||| |||||||| ||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
31193178 |
aaacttcctatggagaatagtcaagaatatcctgcctgttcgtgtcaatttaagaaaaaaaggaatcaatttggccttgaaatgcccaatccgtca |
31193273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University