View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19239_high_18 (Length: 379)
Name: NF19239_high_18
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 44643789 - 44643439
Alignment:
| Q |
17 |
agattgatccctacaagatctacttcgctcttatgagcatatatcccataataagctaacaaagttttctttgtatcgttctaattttatccgatgtcat |
116 |
Q |
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| T |
44643789 |
agatcgatccctacaagatctacttcgctcttatgagcatatatcccataataagctaacaaagttttctttgtatcgttctaaatttatctgatgtcct |
44643690 |
T |
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| Q |
117 |
cgaagggacaagccaacaaagttttaatttggcaaacaattgtctttgaatacattacaaaactaaccaccttcgttttcactagtgctttatgttttta |
216 |
Q |
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| T |
44643689 |
cgaagggacaagccaacaaagttttaatttggcaaacaattgtctttgaatacattacaaaactaaccaccttcgttttcactagtgctttatgttttta |
44643590 |
T |
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| Q |
217 |
aaaataataaattgttgctattcattcatctgtttgttgttttgccactgtttcgatgtccctctgaaattatagtacatgaataaagaagaatcaatgg |
316 |
Q |
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| T |
44643589 |
aaaataataaattgttgctattcattcatctgtttgttgttttgccaccgtttcgatgtccctctgaaattatagtacacgaataaagaagaatcaatgg |
44643490 |
T |
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| Q |
317 |
agaatcaagtacaagaagacatgaagatatctttcaatattccacaggttc |
367 |
Q |
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| T |
44643489 |
agaatcaagtacaagaagacatgaagatatctttcaatattccacaagttc |
44643439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 41812203 - 41812155
Alignment:
| Q |
83 |
ttctttgtatcgttctaattttatccgatgtcatcgaagggacaagcca |
131 |
Q |
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| T |
41812203 |
ttctctgtatcgttccaattttatcggatgtccccgaagggacaagcca |
41812155 |
T |
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