View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19239_high_20 (Length: 369)
Name: NF19239_high_20
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 9197368 - 9197013
Alignment:
| Q |
1 |
atgcaggttctaactcgattaataaaatgtcaaaatagtttatattagacgttgtgattatggtttgaactccgatttttgtaattaaatgtgaatcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9197368 |
atgcaggttctaactcgattaataaaatgtcaaaatagtttatattagacgttgtgattatggtttgaactccgatttttgtacttaaatgtgaatcttt |
9197269 |
T |
|
| Q |
101 |
aataactattgnnnnnnnnaaaaggattttaatgactattgttattttgtctatttaaaaagaaactactaacnnnnnnnnntgaaacttgtatttctac |
200 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9197268 |
aataactatt-ttttttttaaaaggactttaatgactattgttattttgtctatttaaaaagaaactactaacaaaaaaaa-tgaaacttgtatttctac |
9197171 |
T |
|
| Q |
201 |
acatacctttctacaaataatctcaaaaataaaatcaattctaagctaataataacaatcatcccttgaaacaatcatatcatcaagaaatatattgata |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
9197170 |
gcatacttttctacaaataatctcaaaaataaaatcaattttgagctaataataacaatcatcccttgaaacaaacatatcatcaagtaatatattgata |
9197071 |
T |
|
| Q |
301 |
ctcttctctctcctctcctttcgagactctaatcgtcaccacttttattcttcttcat |
358 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
9197070 |
ctcttctctctcctctcctttcgagaccctaatagtcaccacttttattcttcttcat |
9197013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University